Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AP012306 | 341,377 | 0 | T | G | 33.9% | 195.9 / 21.4 | 126 | G60G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
Reads supporting (aligned to +/- strand): ref base T (15/67); new base G (42/0); total (59/67) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 9.78e-21 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 201 total aligned reads displayed.
CTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGC > AP012306/341228‑341525 | tAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTg < 2:2289295/150‑1 (MQ=255) gCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGgaaa > 2:34591/1‑150 (MQ=255) gCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑AGGTGaaaa > 1:3835157/1‑150 (MQ=255) cTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCTGAAGTACACGCGTTGCGTATGGC‑GGGTGaaaaa < 1:2695418/150‑1 (MQ=255) cTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGaaaaa < 2:2345139/150‑1 (MQ=255) cTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGaaaaa < 2:3808302/150‑1 (MQ=255) cTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGaaaaa < 2:1770970/150‑1 (MQ=255) ggCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGgaaaaac > 1:550034/1‑148 (MQ=255) ggCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGc < 1:409413/150‑1 (MQ=255) ggCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGgaaaaag > 2:1020510/1‑148 (MQ=255) cgcAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCa < 2:2854211/150‑1 (MQ=255) cgcAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCa < 1:35829/150‑1 (MQ=255) gcAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCaa < 2:4381904/150‑1 (MQ=255) cAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCaaa < 2:1463350/150‑1 (MQ=255) cAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCaaa < 1:1392853/150‑1 (MQ=255) aCGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAgg < 2:2981795/150‑1 (MQ=255) gAGGGCGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGGGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCTCCAAGGTGCGGG‑TGAACCACATGCCGAAGTCCACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGTg < 2:1446609/150‑1 (MQ=255) aGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGTGc < 2:1604190/150‑1 (MQ=255) gACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGGGAAAAAACCaaaagggga > 2:549667/1‑144 (MQ=255) gACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAACCAAAAGTGCGa > 1:1242912/1‑150 (MQ=255) tttACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGcc < 1:83002/150‑1 (MQ=255) aCGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTAAAAAAGCCAAAGGTGCGA‑CCGCCTATGTc < 1:4210641/150‑1 (MQ=255) cGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGGAAAAACCAAAGGGGCGA‑CCGCCTATGTca > 1:87977/1‑150 (MQ=255) gCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAACCAAAAGGGCGA‑CCCCCCATGTcac > 1:3009177/1‑150 (MQ=255) aTCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGGGCGA‑CCGCCTATGTCacac > 1:1656418/1‑150 (MQ=255) aTCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAAGTGCGA‑CCGCCTATGTCacac > 1:2244687/1‑150 (MQ=255) aTCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAGTCAAAAGAGCGA‑CCGCCCAtataccca > 1:3065954/1‑143 (MQ=255) cAACCCAAATTGTCGGGTGCGTCATGGAAAAAGATGGCGAATTTGGCGGTGAGGTTTCCCCCCACCGTGGGGG‑TAAACCACATGCCGAAACACCCGGTTGGCGTTTGGG‑GGGGAAAAAAGCAAAAGGTGCGA‑CCGCCTATGTCACACTCg < 2:2060208/150‑1 (MQ=255) accccGAA‑TGCGGGCAGCGTTATTGTCAAAGATGGCGAAATTGCCGGTGAAGTTTCCCCCCAACG‑GCGGGTTGACCCACTCGCCGAGGTCCTCGCTTTCCGTATGGG‑GGTTAAAAAAGCCAAAGGGGGGA‑CCGCCTATGTCACACTCGaa < 2:114624/148‑1 (MQ=255) aaCCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAACCAAAAGGGGGG‑CCCCCCATGTCACCCTCCaa > 2:3990583/1‑150 (MQ=255) aaCCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAACCAAAAGGGCGA‑CCGCCTATGTCACACTCGaa > 1:669115/1‑150 (MQ=255) aaCCCGAA‑TGTCGGGTGCGTCATTGTAAAAGAGGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGG‑GGGTAAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGaa < 1:362683/150‑1 (MQ=255) ccccGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTAAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAAc < 1:2953377/149‑1 (MQ=255) aCCCGAA‑TGGCGGGTGCGTCATTGTCAAAGATGGCGAAATGGTGGGTGAGGTTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACCCGCGTTGCGTATGGG‑GGGTAAAAAAGCAAAAGGTGCGA‑CCGCCTATGTCACACTCGAAc < 2:2434194/150‑1 (MQ=255) cGAA‑TGCCGGGGGCGTCATTGTCAAAGAGGGCGAAATTGGGGGTGAAGGTTACCCCCACCGTGCGGG‑TGAACCACATGCCGAAGTACCCGCGTTGCGTATGCC‑GGGTAAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCt < 2:80653/150‑1 (MQ=255) aa‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGGGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAAACAAAAGGGGGG‑CCCCCCCTTTTACACTCCAAcccctt > 1:1360904/1‑147 (MQ=255) gTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAACCAAAAGGGGGG‑CCCCCCATGTCACACTCCAAACCCGTAGc > 2:2964342/1‑150 (MQ=255) gggTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGGAAAAGCCAAAAGAGCGG‑CCGCCCCCGTCACACTCCAACCCTCTCGccct > 1:4393679/1‑148 (MQ=255) ggTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGGAAAAACCCAAAGTGCGA‑CCCCCCATGTCACACTCGAACCCTGTAGCcatc > 1:2315187/1‑150 (MQ=255) ggTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAACCAAAAGTGGGG‑CCGCCCATGTCCCACTCGCAACCCGTAGCcatc > 2:3621019/1‑150 (MQ=255) gTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAACCAAAGGGGCGA‑CCCCCCATGTCACACTCGAACCCCGTAGCCATCATTGt > 2:1887403/1‑150 (MQ=255) tCATTGCAAAAGATGGCAAAATTGTGGGTGAGGGTTCCCACCAACGTGGGGG‑TAAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTAAAAAACCAAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTc < 2:2472947/150‑1 (MQ=255) tGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTAc < 1:2359458/150‑1 (MQ=255) tGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGGGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTAc > 1:3779505/1‑150 (MQ=255) gTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAACCAAAAGGGCGG‑CCGCCCCTGTCACACCCCAACCCCCTAGCCCTCATGGTCGTTCg > 2:3209553/1‑150 (MQ=255) tCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAACCAAAAGGGCGG‑CCGCCCATGTCACACCCCCACCCCTTAGCCCCCCTGGGCGTACGc > 2:1213271/1‑150 (MQ=255) aaaGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAACCAAAAGGGCGA‑CCGCCCATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCa > 2:1299307/1‑150 (MQ=255) aaGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCAc < 1:1457772/150‑1 (MQ=255) atgggaaaaGTGTCGGTGAGGGTTACCACAAACGTGCGGG‑CGAACCACATCCCGAATTACACGCGTTGCGTATGGG‑GGGTGAAAAAGCCAAAGGTGCGT‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGt < 2:2927912/144‑1 (MQ=255) gggCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTg < 1:3404777/149‑1 (MQ=255) ggCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGGGAAAAACCCAAAGG‑GGGA‑CCGCCCCTGTCACACTCCAACCCCCTAGCCATCATGGGCGTACGCccccccgc > 2:3095026/1‑146 (MQ=255) ggCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGGGAAAAACCCAAAGG‑GCGA‑CCCCCCATGTCACACTCGAACCCTGTAGCCATCATGGGCGTACGCCACCGTGc > 2:2792647/1‑150 (MQ=255) ggCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAACCAAAAGGGGGA‑CCCCCCATGTCCCACTCCGACCCCGTAACCCCCCTGGTCGTACGCccccccgc > 2:2746251/1‑146 (MQ=255) gAAATTTTCGGTAAAGTTTCCCACCAACCTGCGGG‑TCACCCACATCCCGAATTCCCCGCTTTCCTTATCGC‑GGGTAAAAAACCCAACGCTCCCC‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCtgt < 2:1198351/150‑1 (MQ=255) gAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAGACAAAAGTGCGA‑CCGCCTATGTCACACTCGAACCCTCTAGCCATCATGGTCGCACCCCACCCTGCtgt > 2:4124378/1‑150 (MQ=255) aTTGTCGGTGAAGGTTACCACCACCGGGCGGG‑TGAACCACATGCCGAAGTACAGGCTTTGCGTATGGG‑GGGTAAAAAAGCAAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGAc < 2:1709948/150‑1 (MQ=255) tGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGGGGGGAAAAACCCAAAGG‑GCGA‑CCCCCCCTGTCACACCCGAACCCCGTAGGCATCATGGGCGTACGCCACCCCGCTGTGACGc > 2:3010528/1‑150 (MQ=255) cGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAACCAAAAGGGGCA‑CCACCCATGTTCCACTCCGACCCTCTAGCCCTCATGGTCGTACGCCCCCGTGCTGGGACGCACt > 2:3289382/1‑150 (MQ=255) ggTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCAAAGGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTc < 2:2364152/150‑1 (MQ=255) ggTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGCGGAAAAAACCAAAAGGGGGA‑CCCCCCATGTCAAACCCTGACCCCGCAACCATCCTGGGCGTCCGCCCCCGGACCGTGACGCAccc > 2:732718/1‑148 (MQ=255) gAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAGCCAAAAGGGCGA‑CCGCCCATGGCACACTCGAACCCCGTAGCCATCATGGGCGTACGCCACCGGGGTGTGACGCCCCCATc > 2:426181/1‑150 (MQ=255) aaGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAACCAAAAGGGCGA‑CCCCCCATGTCACACTCCAACCCTGTAGCCATCATGGTCGTACGCCACCCTGCTGTGACGCACCCCTcg > 2:3611621/1‑150 (MQ=255) ggTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGGAAAAGCCAAAAGGGCGA‑CCGCCTATGTCACACCCGAAACCGGTAGCCATCATGGGCGTACGCCACCGAGCCGTGACGCACTCCTcccc > 2:394711/1‑150 (MQ=255) ggTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAACCAAAGGGGCGA‑CCGCCCATGTCACACTCGAACCCCGTAGCCATCATGGTCGTACGCCCCCGCGCTGTGACGCACTCATcgcc > 2:3476347/1‑150 (MQ=255) gTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAAACCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATcgccg > 1:1277737/1‑150 (MQ=255) accaccAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTTGTACGCCACCCTGCTGTGACGCACTCATCGCCGCTg > 1:1172626/1‑150 (MQ=255) caccaACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTAGGGC‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGc < 1:202494/150‑1 (MQ=255) accaACGTGGGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGG‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCg < 1:3956335/150‑1 (MQ=255) accaACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAACCAAAAGTGCGA‑CCGCCCATGTCCCACTCCAACCCCGTTGCCCTCATGGGCGTACGCCACCCCGGTGGGACGCCCTCATCGCCCCttggg > 2:2039250/1‑146 (MQ=255) accaACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGGAAAAAACAAAAGGGCGA‑CCGCCCATGTCACACTCGAACCCCGTAGCCATCATGGTCGTACGCCACCGTGCTGTGGCGCCCTCCTCGCCCCTGGCg > 2:3587265/1‑150 (MQ=255) accaACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGGGAAAAAACCAAAAGGGCGA‑CCGCCCATGTCACACTCCAACCCTGTAGCCATCATGGTCGTACGCCCCCCTGCTGTGACGCCACCATCCCCGCCGGCg > 2:3629717/1‑150 (MQ=255) aggggCGGG‑TGAACAAAATGCCGAAGTACAGGCGTGGCGTATGGG‑GGGTAAAAAAGCAAAGGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAgc < 2:1937776/146‑1 (MQ=255) cGTGGGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAgcg < 1:1312031/150‑1 (MQ=255) cGTGGGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCAAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAgcg < 1:3728857/150‑1 (MQ=255) ggg‑TGAACCACATGCGGAAGTCCACGCGTTGCGTAGGGG‑GGGTAAAAAAGCAAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGAGGCACTCATCGCCGCTGGCGTAGCGCGCGt < 1:1995244/150‑1 (MQ=255) tGACCCAAATGCCAAAGTACACGCGTTGCGTATGGG‑GGGTGAAAACGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGt < 1:2773369/150‑1 (MQ=255) gAACCACATGCGGAAGTACACGCGTGGCGTAGGGG‑GGGTAAAAAAGCAAAAGGGGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGtt < 2:3914538/150‑1 (MQ=255) gAACCACATGCCGAAGTACACGCGTGGCGTATGGC‑GGGTAAAAAAGCAAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGtt < 1:3201018/150‑1 (MQ=255) cacaGGCCGAAGGACCCGCGTTGCGGAGGGC‑GGGTGAAAAAGCCAAAGGTGGGC‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCt < 2:587497/150‑1 (MQ=255) caaTGCCGAGTTACACGCGTTGCGTAGGGC‑GGGTAAAAAAGCAAAGGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTc < 2:2568255/148‑1 (MQ=255) acaTGCCGAAGTACACGCTTTGCGTATGGC‑GGGTAAAAAGGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTc < 1:1788241/150‑1 (MQ=255) gCCGAAGTACACGCGTTGCGTATGGC‑GGGTAAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTAGCCTCGATg < 1:2838634/150‑1 (MQ=255) gCCGAAGTACACGCGTTGCGTATGGC‑GGGTAAAAAAGCAAAGGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATg < 1:4297383/150‑1 (MQ=255) aaGTACCCGGGTCGCGTAGGGG‑GGGAAAAAAAGCCAAGGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAg < 2:816057/150‑1 (MQ=255) aGTACACGGGTTGCGTATGGC‑GGGTGAAAAAGCAAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGa < 1:3441383/150‑1 (MQ=255) aGTACACGCGTTGCGTTGGGG‑GGGTGAAAAAGCAAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGa < 2:2489286/150‑1 (MQ=255) tACACGCGTTGCGTATGGC‑GGGGGAAAAAACCAAAGGTGGGA‑CCCCCCATGTAACACTCGAACCCTTTAGCCATCATGGTCGGACGCCACCGTGGTGTGACGCACTCAACCCCCCCGGCGTAGCGCGCGTGGTTGCCTCCTTGCAAGATc > 2:1539168/1‑150 (MQ=255) acacGCGTTGCGTATGGC‑GGGGGAAAAAAACAAAAGGGGGA‑CCCCCCATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCCCCGTGCTGTGACGCACTCATCGCCGCCGGCGGAGCGCGCGTGGTTGCCTCGATGCAAGATcc > 2:2622504/1‑150 (MQ=255) acGCGTTGCGTAGGGG‑GGGTAAAAAAGCAAAGGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTa < 2:4295270/150‑1 (MQ=255) ggtttGCGTAGGGG‑GGGTGAAAACCCCAAGGGTCCGC‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAAc < 2:501612/147‑1 (MQ=255) gTTGCGTAGGGC‑GGGTAAAAAGGCAAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAAccc < 1:76104/150‑1 (MQ=255) ttggggttGGG‑GGGTGAAAAAGCCAAAGGTGGGACCCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAAccc < 1:1056576/143‑1 (MQ=255) cGTATGGC‑GGGGGGAAAAACCAAAAAGGCGA‑CCGCCTATGTCCCCCTCGAAACCTGTAGCCATCATGGTCGTACGCCACCGGGCTGTGACGCACTCCTCCCCGCCGGCGTAGCGCGGGTGGTTGCCCCGATGCAAGATCCTAACCCGCAg > 2:4030188/1‑150 (MQ=255) gTATGGC‑GGGTGAAAAAACCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAgg > 2:391394/1‑150 (MQ=255) tagggggggTAAAAAAGCAAAGGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGt < 2:266779/144‑1 (MQ=255) ggC‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGgcgc > 2:3142069/1‑150 (MQ=255) c‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTg > 2:3785319/1‑150 (MQ=255) gggTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTgg > 2:2150829/1‑150 (MQ=255) gggTGAAAAAGCAAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTgg < 1:227420/150‑1 (MQ=255) ggTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGTTCCTAACCCGCAGGTCGCTggg > 2:4359356/1‑150 (MQ=255) | CTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAA‑TGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCACCAACGTGCGGG‑TGAACCACATGCCGAAGTACACGCGTTGCGTATGGC‑GGGTGAAAAAGCCAAAGGTGCGA‑CCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGC > AP012306/341228‑341525 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |