Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AP012306 | 2,212,753 | 0 | A | C | 21.4% | 386.8 / 33.1 | 145 | Y241D (TAT→GAT) | hcaT | predicted 3‑phenylpropionic transporter |
Reads supporting (aligned to +/- strand): ref base A (105/9); new base C (0/31); total (105/40) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.11e-24 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 198 total aligned reads displayed.
CAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCAACC > AP012306/2212604‑2212897 | cAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATa < 2:83268/150‑1 (MQ=255) aaCGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATAc < 2:1073645/150‑1 (MQ=255) cGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑Ac < 2:2443487/150‑1 (MQ=255) gTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑Acc > 2:3866675/1‑150 (MQ=255) tAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑Accg > 1:1001067/1‑150 (MQ=255) tAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑Accg < 1:639462/150‑1 (MQ=255) aGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCCGCGACCACAAATACCCC‑Accgc > 2:51317/1‑150 (MQ=255) aGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑Accgc > 1:3514841/1‑150 (MQ=255) gCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCgccgag > 2:88568/1‑150 (MQ=255) cccATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATCCCCC‑ACCgccgaggcc < 2:772307/150‑1 (MQ=255) cccATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCgcccaggcc > 2:3984612/1‑150 (MQ=255) aTAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCgccgaggccgag > 1:755538/1‑150 (MQ=255) tAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCccccaggcccagg > 2:1884281/1‑149 (MQ=255) aTGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAg < 1:1769315/150‑1 (MQ=255) ccccAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCCCAAATACCCC‑ACCGCCGAGGCCCAGTAGCCa > 2:3190783/1‑150 (MQ=255) cAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTCCCGCCCCCCCGCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGct < 2:197525/150‑1 (MQ=255) aGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGctg < 1:3735005/150‑1 (MQ=255) aCTACGCCGCAAATCGCCGAGATCAACAGCATACCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTCCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGctgcctgc < 1:3546847/150‑1 (MQ=255) tACGCCGCAAACCGCCGAGATCAACAGCATACCGCGTGCACTACACCGGCGAAAAATTTTATTCCTCAGCGCAAAGATAATGACTCCCGCCACCCCGCCCAGCGACCAAAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCa < 2:270671/150‑1 (MQ=255) tACCCCGCAAACCCCCGAGATCAACAGCATATCGCGTGCACCACAACGGGGGAAAAGTTTATTACCCAGCGAAAAGATAATGAGTTCCGCCACCCCGCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCa < 2:3026712/150‑1 (MQ=255) cgccgcAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGt > 1:1850298/1‑150 (MQ=255) cgccacAAACCGCCGAGATCAACAGAATCGCGCGTGCACTACACCGGCGAAAAAGTTAATTACTCAGCCCAAAGAAAATGACTCCCCCCCCCCCCCCCAGCGCCCAAAAATCCCCC‑CCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGt < 2:339335/150‑1 (MQ=255) gcAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGGGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAAt > 2:2218468/1‑150 (MQ=255) aaaTCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATgg > 1:2590858/1‑150 (MQ=255) aaTCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGgc > 1:2936426/1‑150 (MQ=255) ccGAAATCAAAAGAATACCGCGTCCACTCCACCGGGGAAAAATTTTATTCCTCAGCGCAAAGATAATGACTCCCGCCCCCCCGCCCAGCGACCAAAAATCCCCC‑CCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTaa < 2:3132247/150‑1 (MQ=255) cGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAAGCCGAGTAGCCAGCTGCCTGCCAGTAAAAGGCGCTaaa > 2:1928991/1‑150 (MQ=255) cGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACCTCCGCCACCACGCCCAGCGACCACAAATACCCC‑CCCGCCGAGGGCGAGGAGCCAGCTGCCTGCCAGGAAAAGGCGCCaaa > 1:977179/1‑150 (MQ=255) gagaTCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTaaaa > 2:64357/1‑150 (MQ=255) agaTCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAAc > 1:935796/1‑150 (MQ=255) agaTCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGAAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAAc < 1:251582/150‑1 (MQ=255) gaTCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAAcc > 1:2834794/1‑150 (MQ=255) aaCAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTaa > 1:2108571/1‑150 (MQ=255) aCATCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAAt > 1:1981796/1‑150 (MQ=255) aCAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAAt > 1:1154457/1‑150 (MQ=255) aCAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAAt < 1:1482221/150‑1 (MQ=255) aCAGCATACCGCGGGCACTACAACGGCGAAAAAGTTTATTCCCCAGCGCAAAGATAATGCCTTCCGCCCCCACGCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAAt < 2:1678944/150‑1 (MQ=255) aGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCCAGTAGCCAGCTGCCCGCCAGTAAAAGGCGCTAAAACCGGAATAg > 2:2945694/1‑150 (MQ=255) gCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAgg > 2:2342426/1‑150 (MQ=255) gCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGAAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAgg > 1:81541/1‑150 (MQ=255) atatCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGcc > 1:3404963/1‑150 (MQ=255) atatCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGcc > 2:3325590/1‑150 (MQ=255) atatCGCGTGCACTACAACGGCGAAAAATTTTATTCCCCAGCGCAAAGATAATGACTTCCGCCACCACGCCCGGCGCCCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGcc < 2:708938/150‑1 (MQ=255) atacCGCGTCCCCTACAACGGCGAAAAATTTTATTCCTCAGCGCAAAGATAATGCCTCCCGCCACCACGCCCACCGCCCAAAAACCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGcc < 2:76502/150‑1 (MQ=255) gcgTGCACAACACCGGCGAAAAATTTTATTACCCAGCGCAAAGATATTCCCTTCCTCCACCAGGCCAGGCAACCACAAATACCCC‑GCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAtg < 2:1557313/150‑1 (MQ=255) cgTGCACTCCAACGGGGAAAAATTTTATTCCTCAGCGCAAAAATAATGACTCCCGCCACCCCGCCCAGCGACCACAAATCCCCC‑CCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCAtgt < 2:2292138/150‑1 (MQ=255) tGCACTACAACGGCGGAAAAGATTATTACTCAGCGCAAAGATAAAGGCTTTCACCCCCAACCCCAGCGACCACAAATACCCC‑ACCGCCGGGGCCCAGTGGCCAGCTGCCTGCCAGTAAAAGCCGCTAAAACCGTAACACGCCGCATGTGc > 2:1526735/1‑150 (MQ=255) acacCGGCGAAAAATTTTATTCCTCAGCGAAAAGATAATGCCTCCCCCCCCCCCGCCCAGCGACCACAAATCCCCC‑CCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTg < 2:2596456/150‑1 (MQ=255) accggcgaAAAATTTTATTACTCAGCACAAAGAAAATACCTCCCGCCACCACGCCAAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCa < 2:3488251/148‑1 (MQ=255) aCGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCaa > 2:1832954/1‑150 (MQ=255) aCGGCGAAAAAGTTTATTACCCAGCGCAAAGAAAATGACTCCCGCCACCACCCCCAGCGCCCACAAACCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCaa < 2:212754/150‑1 (MQ=255) cggcggAAAAGTTTATTACTCAGCGAAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAAt < 1:3221540/150‑1 (MQ=255) gcggAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaa > 1:3491773/1‑150 (MQ=255) gcgaAAAATTTTATTACTCAGCGAAAAGATAATGCCTCCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaa < 1:2741692/150‑1 (MQ=255) cggAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaa > 1:2648452/1‑150 (MQ=255) gAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaaca > 2:410636/1‑150 (MQ=255) gAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaaca > 1:1684083/1‑150 (MQ=255) aaaaGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaacaa > 2:1268073/1‑150 (MQ=255) aaaaGTTTATACCCCAGCCAAAAGAAAAGGCCTCCCGCCACCACGCCCAGCGACCAAAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaacaa < 2:3540326/150‑1 (MQ=255) aaaaGTTCATTCCTCAGCGCAAAGATAATGACTCCCGCCACCACGCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaacaa < 2:3171403/150‑1 (MQ=255) aaaTTTTATTACCCAGCGAAAAAAAAATGACTCCCGCCCCCCCCCCAAGCGACCACAAACCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATaaacaaa < 2:26723/150‑1 (MQ=255) aGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACg > 2:2018918/1‑150 (MQ=255) aGTTTATTACACAGCGAAAAGAAAATGACTCCCGCCCCCACGCCCAGCGCCCACAAACCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACg < 2:3098484/150‑1 (MQ=255) ttattaCTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAg > 1:705775/1‑150 (MQ=255) attaCTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGc > 1:1711567/1‑150 (MQ=255) attaCTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGc > 2:630776/1‑150 (MQ=255) ttaCTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGcc > 2:610683/1‑150 (MQ=255) taCTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCa > 2:3154395/1‑150 (MQ=255) aCTCAGCGCAAAGATAATGCCTCCCGCCACCCCGCCCAGCGACCAAAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAg < 1:1287165/150‑1 (MQ=255) aCTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAg > 2:3751540/1‑150 (MQ=255) cTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGGCAGa > 1:3301376/1‑150 (MQ=255) cAGCGCAAGGATAATGACTTCCGCCCCCACGCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGaaa < 1:613971/150‑1 (MQ=255) cAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGaaa > 1:2555988/1‑150 (MQ=255) cAGCACAAAGATAAGGCCTTCCCCCACCCCGCCCAGCGCCAACAAATCCCCCTACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGaa < 2:492056/150‑1 (MQ=255) gcgaAAAAAAAATTACTCCCGCCACCCTGCCCAGCGACCCCAACTCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAgc < 1:1018335/150‑1 (MQ=255) gcAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAgcgc > 1:3257762/1‑150 (MQ=255) aaaaATAATGACTCCCGCCACCCCCCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCa < 2:2471984/150‑1 (MQ=255) aaaGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCa > 2:2993492/1‑150 (MQ=255) aaGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAg > 1:1887818/1‑150 (MQ=255) tAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCt > 1:175650/1‑150 (MQ=255) tAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCt > 1:3102495/1‑150 (MQ=255) aaaggccTTCCGCCCCCACCCCCAGCAACCAAAAACCCCCC‑CCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCt < 2:828967/144‑1 (MQ=255) aaTGACTCCCCCCCCCCCCCCCAGCGACCAAAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTg < 2:1369599/150‑1 (MQ=255) gACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCg > 2:1608474/1‑150 (MQ=255) gACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCg > 2:3523715/1‑150 (MQ=255) gACTCCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCg < 1:462930/150‑1 (MQ=255) cTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGaa > 1:2292077/1‑150 (MQ=255) tCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAAcc > 1:1208739/1‑150 (MQ=255) tCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGGGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAAcc > 2:1014326/1‑150 (MQ=255) cccGCCCCCCCGCCCGGCGACAAAAAATCCCCC‑CCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAAcc < 2:940157/149‑1 (MQ=255) ccGCCACCACGCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCa < 1:199065/150‑1 (MQ=255) gCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAgc > 1:2442644/1‑150 (MQ=255) caccacGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAgcgc > 1:139194/1‑150 (MQ=255) ccGCCCAGCGACCACAAATCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAAc < 1:1606243/149‑1 (MQ=255) gCCAAGCGACAACAAACCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCa < 1:3958137/150‑1 (MQ=255) cccAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCAc > 1:2420988/1‑150 (MQ=255) cAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGc > 2:3260398/1‑150 (MQ=255) cgcccAAAAATCCCCC‑CCCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGa < 2:2548386/147‑1 (MQ=255) cacaAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCaa > 1:2334756/1‑150 (MQ=255) aaaaTCCCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCAAcc < 2:1646898/149‑1 (MQ=255) | CAACGCCGTAGTTGCTCCCATAATGCCCCAGCGCACTACGCCGCAAATCGCCGAGATCAACAGCATATCGCGTGCACTACAACGGCGGAAAAGTTTATTACTCAGCGCAAAGATAATGACTTCCGCCACCACGCCCAGCGACCACAAATACCCC‑ACCGCCGAGGCCGAGTAGCCAGCTGCCTGCCAGTAAATGGCGCTAAAACCGTAATAGGCCGCATGTGCCCCCTGCAATAAACAAACGCAGGCCAGAAAGCGCCAGTTCTGGCGAACCAGCGCCAACCACGCAGACCAACC > AP012306/2212604‑2212897 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |