New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP012306	643801 =	316 (1.030)	13 (0.060) +ACTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAA	13/210	18.2	6.3%	noncoding (1/76 nt)	valZ	tRNA‑Val
	?	AP012306	= 643878	234 (0.760)					intergenic (+2/‑2)	valZ/lysY	tRNA‑Val/tRNA‑Lys
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP012306/643860‑643801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCC  <  AP012306/643878‑643801                                                             ||||||||||||||||||||||||||||||||||||||||||||                                                                               aacCGACCCGCCGCCCCCCTCCTTGTAAGGGGGGTGCTCTCCCAGCTGAGCTAATCCCCCACTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAA                                  <  2:2327823/147‑1  cTCGAACTGCCGCCCTCCTCCTTGTAGGGGAGGTGTTCGCCCAGCTGACCTAATCCCCCATTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGGGGGTGATGACGGGATCAAACCGCCGACCCCCTCCTTGTAAG                                 <  2:2890277/149‑1     cacCCGCCGCCCCCCTCCTTGTAGGGGAGGTGCTCTCCCAGCTGAGCTAATCCCCCACTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGA                              <  2:3157/147‑1      acCCGCCGCCCCCCTCTTTGTAGGGGGGGTGCTCTCCCAGCTGAGCTAATCCCCCACTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGGGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAG                             <  2:2947838/148‑1             GACCCCTTCTTTGTAAGGGGGGTGCTCTCCCAGCTGAGCTAATCCCCCATTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCT                      <  2:2781014/150‑1                  CCTCTTTGTAGGGGGGTCGCTCTCCAAGCTGACCTAGTCACCCATTTCGGTACTTCACATTTTTACAAAAAATTTAGCGGGCGAGAAAGTGGTGGGTGATGACGGAATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAG                 <  2:292960/150‑1                    TCCTTGTAGGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCTCTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCT               <  2:2507489/150‑1                     CCTTGTAGGGGGGGTGCTCTCCCAGCTGAGCTAATCCCCCATTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTG              <  2:1959059/150‑1                        TGTAGGGGAGGTGCTCTCCCAGCTAAGCTAATCACCCACTTCGGTACTTCACATTTTTACAAAAAATTTAGCGGGCGAGAAAGTGGTGGGTGATGACGGGACCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGC           <  2:1024544/150‑1                           AAGGTAGGTGCTCTCACAGCTGAGAAAATCACCCCCTTGGATACTTCACTTTTTTACAAAAAATTTAGCCGGAGAGAAGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAA        <  2:897714/150‑1                             GGGAGGTGCTCCCCCAGCGGAGCTACTCCCCCTCTTCGGAACTTCAAATTTTTACAAAAATTTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATC      <  2:907604/150‑1                              gggGGTGCCCCCCAAGCGGAGCTAACCCCCCTTTTCGATACTTCACATTTTTAAAAAAAATTTAGCGGGCGAGAAGGGGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCA     <  2:4158840/147‑1                                 ggcGCTCTCCATGCGGACCTAATCCCCCTTTTTGAAACTTCACATTTTTACAAAAATTTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCC  <  2:2837766/147‑1                                                             ||||||||||||||||||||||||||||||||||||||||||||                                                                               GATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP012306/643860‑643801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCC  <  AP012306/643878‑643801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.