| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP012306 | 643801 = | 316 (1.030) | 13 (0.060) +ACTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAG |
13/206 | 17.9 | 5.7% | noncoding (1/76 nt) | valZ | tRNA‑Val |
| ? | AP012306 | = 2073420 | 312 (1.010) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP012306/643860‑643801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCCCGCTGTGTGGAGTCGCATTATAGGGAGAGTTCAAAATGAGTCAACGCATTTTCTAAAGAAATTGTTCGTT < AP012306/2073420‑2073274 |||||||||||||||||||||||||||||||||||||||||||||| aacCGACCCGCCGCCCCCCTCCTTGTAAGGGGGGTGCTCTCCCAGCTGAGCTAATCCCCCACTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAA < 2:2327823/147‑1 cTCGAACTGCCGCCCTCCTCCTTGTAGGGGAGGTGTTCGCCCAGCTGACCTAATCCCCCATTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGGGGGTGATGACGGGATCAAACCGCCGACCCCCTCCTTGTAAG < 2:2890277/149‑1 cacCCGCCGCCCCCCTCCTTGTAGGGGAGGTGCTCTCCCAGCTGAGCTAATCCCCCACTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGA < 2:3157/147‑1 acCCGCCGCCCCCCTCTTTGTAGGGGGGGTGCTCTCCCAGCTGAGCTAATCCCCCACTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGGGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAG < 2:2947838/148‑1 GACCCCTTCTTTGTAAGGGGGGTGCTCTCCCAGCTGAGCTAATCCCCCATTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCT < 2:2781014/150‑1 CCTCTTTGTAGGGGGGTCGCTCTCCAAGCTGACCTAGTCACCCATTTCGGTACTTCACATTTTTACAAAAAATTTAGCGGGCGAGAAAGTGGTGGGTGATGACGGAATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAG < 2:292960/150‑1 TCCTTGTAGGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCTCTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCT < 2:2507489/150‑1 CCTTGTAGGGGGGGTGCTCTCCCAGCTGAGCTAATCCCCCATTTCGGTACTTCACATTTTTACAAAAAATTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTG < 2:1959059/150‑1 TGTAGGGGAGGTGCTCTCCCAGCTAAGCTAATCACCCACTTCGGTACTTCACATTTTTACAAAAAATTTAGCGGGCGAGAAAGTGGTGGGTGATGACGGGACCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGC < 2:1024544/150‑1 AAGGTAGGTGCTCTCACAGCTGAGAAAATCACCCCCTTGGATACTTCACTTTTTTACAAAAAATTTAGCCGGAGAGAAGGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAA < 2:897714/150‑1 GGGAGGTGCTCCCCCAGCGGAGCTACTCCCCCTCTTCGGAACTTCAAATTTTTACAAAAATTTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATC < 2:907604/150‑1 gggGGTGCCCCCCAAGCGGAGCTAACCCCCCTTTTCGATACTTCACATTTTTAAAAAAAATTTAGCGGGCGAGAAGGGGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCA < 2:4158840/147‑1 ggcGCTCTCCATGCGGACCTAATCCCCCTTTTTGAAACTTCACATTTTTACAAAAATTTTAGCTGGCGAGAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCC < 2:2837766/147‑1 acccgAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCCCTTCGGGAGTTCTCGCTTTATCGGGAGAGTTCAATATGAGTCAACGCATGTTCTAAAGAAATTGT > 2:2563198/6‑150 aaaggagGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCCCGCTGTGTGGAGTCGCATTATAGGGAGAGTTCAAAATGAGTCAACGCATTTTCTAAAGAAATTGT < 2:21218/143‑1 gagGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCCCGCTGTGTGGAGTCGCATTATAGGGAGAGTTCAAAATGAGTCAACGCATTTTCTAAAGAAATTGTTCGT < 2:652443/147‑1 agGTGGTGGGTGATGACGGGATCGACCCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCCCGCTGTGTGGAGTCGCATTATAGGGAGAGTTCAAAATGAGTCAACGCATTTTCTAAAGAAATTGTTCGTT < 1:1091866/148‑1 |||||||||||||||||||||||||||||||||||||||||||||| GATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP012306/643860‑643801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCCCGCTGTGTGGAGTCGCATTATAGGGAGAGTTCAAAATGAGTCAACGCATTTTCTAAAGAAATTGTTCGTT < AP012306/2073420‑2073274 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |