Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AP012306 | 800,675 | 0 | A | C | 26.8% | 671.2 / 31.9 | 280 | T192P (ACC→CCC) | lolA | chaperone for lipoproteins |
Reads supporting (aligned to +/- strand): ref base A (156/49); new base C (0/75); total (156/124) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.01e-35 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 328 total aligned reads displayed.
GCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACA > AP012306/800526‑800824 | aaTGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CAcc > 1:575931/1‑150 (MQ=255) aaTGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CAcc > 2:3607906/1‑150 (MQ=255) aaTGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CAcc > 2:2955373/1‑150 (MQ=255) aTGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CAccc > 2:3299677/1‑150 (MQ=255) tGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CAcccc < 2:2557132/150‑1 (MQ=255) cAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCccgcc > 2:2597470/1‑150 (MQ=255) cTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCaa > 2:822820/1‑150 (MQ=255) tGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAg > 2:1413916/1‑150 (MQ=255) aaGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGc > 2:3532199/1‑150 (MQ=255) aGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCg > 2:807641/1‑150 (MQ=255) aGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCa > 1:461849/1‑150 (MQ=255) aGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCa > 1:3852617/1‑150 (MQ=255) aGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCa > 2:2255000/1‑150 (MQ=255) cATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAAGGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAga < 1:1026797/150‑1 (MQ=255) aTTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAgat > 1:2839524/1‑150 (MQ=255) aTTAACGTGGGACGTGATGGCACAACCCATCAGTTTAGCGGGGTGGAGCAGAACGATCAGCCCAGCAGTTATCAACTG‑AATGCCCAGCAAAATGGGGCTGTGGAGGAAGCAAAATTTACCTC‑CCCCCCGCCGCAAGGCGTCACGGTAgat < 2:2082178/150‑1 (MQ=255) aaCGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAgatgat > 2:2903149/1‑150 (MQ=255) cGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAACCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCa < 2:665247/150‑1 (MQ=255) tGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAAc > 2:2768340/1‑150 (MQ=255) ggACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCACCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGt > 2:2669718/1‑150 (MQ=255) cGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAg > 1:2801665/1‑150 (MQ=255) gTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGt > 1:3590378/1‑150 (MQ=255) tGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTa < 1:2154237/150‑1 (MQ=255) tGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTa > 1:1828155/1‑150 (MQ=255) gATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTag > 2:2831793/1‑150 (MQ=255) tGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCAAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTagag < 1:1755936/150‑1 (MQ=255) ggCAGAATCCATCGTTTTAGCGGGGTGGAGCAGGACGATCAGCGCAGAAGTTATCAACTA‑AAACCCCAGAAAAATGGGCCTGTGGATTAAGCAAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAgg < 2:493545/150‑1 (MQ=255) gCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGc > 2:1931521/1‑150 (MQ=255) gCAAAACCCACCAGTTTAGCGCGGTGGAGCAGGACGACCAGCGCAGCAGTTATCAACTA‑AACCCCAAGAAAAATGGGGTTGTGGATGCAGC‑AAATTTTCCTTCCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGc < 2:2983415/150‑1 (MQ=255) acaATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCAc > 1:3438116/1‑150 (MQ=255) caATCCATCAGTTTAGCGCGGTGGAGCAGGACGATAAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTCCCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCAcc < 1:1349925/150‑1 (MQ=255) acccAGCAGTTTAGCGCGGGGGAGCAGCACCACCAGCCGAGCAGTTATCACCTG‑AAAGCCCAACAAAATGGGGCTGTGGATGCTGCGAATTTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGGAGAGGCACCtg < 2:3248166/148‑1 (MQ=255) ccATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgag > 1:1091723/1‑150 (MQ=255) ccATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAACCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgag < 2:3700028/150‑1 (MQ=255) aTCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgagtg > 2:2635256/1‑150 (MQ=255) cAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgggtgat > 2:424350/1‑149 (MQ=255) tttAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCaa > 2:3776550/1‑150 (MQ=255) tttAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAAGGGGGCTGTGGATGCAGCGAAATTTCCCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCaa < 2:3481590/150‑1 (MQ=255) ttAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGGGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAAt < 2:1297684/150‑1 (MQ=255) tAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATc < 1:2296/150‑1 (MQ=255) aGCGCGGTGGGGCGGGACGATCAGCGCAGAATTTA‑CAACCGAAAACCCCAGAAAAGGGGGGCTGTGGAGGCAGCAAATTTTCCCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCt < 2:2023776/150‑1 (MQ=255) aGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCt > 1:4189978/1‑150 (MQ=255) cgcgGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGt < 1:1487951/150‑1 (MQ=255) gcgGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTc < 2:401432/150‑1 (MQ=255) gcgGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTA‑AAACCCCAGAAAAATGGGGCTGTGGATGCAGCAAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTc < 1:755273/150‑1 (MQ=255) gTGGAGCAGAAGGATCAGGGCAGCAGTTAGCAACTG‑AAATCCCACCAAAATGGGCCGGTGGATGCAGCGAAATTTCCCTT‑CTCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCt < 2:1503256/150‑1 (MQ=255) ggAGCAGGACGATGAGCGCAGCAGTTATCAACTG‑AAATCCGAGCAAAAGGGGGCGGTGGATGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCg < 2:1612027/150‑1 (MQ=255) aGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGAAAAATGGGGTTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGAt < 2:243478/150‑1 (MQ=255) cAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGAttt > 1:2413779/1‑150 (MQ=255) ggACGATCAGCGCAGCAGTTATCAACTA‑AAATCCCAGAAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGAttttt < 1:649596/150‑1 (MQ=255) gACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTc > 1:2081286/1‑150 (MQ=255) gACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTc > 2:371765/1‑150 (MQ=255) aCGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCg > 2:384072/1‑150 (MQ=255) cGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCgg > 1:847013/1‑150 (MQ=255) gATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGa > 1:1449447/1‑150 (MQ=255) aTCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGat > 2:2088615/1‑150 (MQ=255) tCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGata < 1:2558783/150‑1 (MQ=255) aGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGataat < 1:1903120/150‑1 (MQ=255) aGCGCAGCAGTTATCAACTA‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGataat < 2:450665/150‑1 (MQ=255) cgcAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATAc > 2:13660/1‑150 (MQ=255) gcagcaGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACt < 1:3505571/150‑1 (MQ=255) gcagcaGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACt > 1:2961692/1‑150 (MQ=255) cacctgTTATCAACTA‑AACCCCCAGCAAAGGGGGGCTGTGGATCCAGCAAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACtt < 2:3129223/145‑1 (MQ=255) agcagTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACttt > 2:4139509/1‑150 (MQ=255) cagTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTc > 2:1704397/1‑150 (MQ=255) aaCTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTg > 1:2512447/1‑150 (MQ=255) aCTG‑AAATCCCAGAAAAAGGGGGCTGTGGATGCAGGTAATTTTCCCCT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTgg < 1:1180395/150‑1 (MQ=255) cTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGc < 1:3429949/150‑1 (MQ=255) tG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTCCCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGcc < 1:2599702/150‑1 (MQ=255) tG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGcc > 1:1783070/1‑150 (MQ=255) g‑AAACCCCAGCAAAAGGGGGCTGTGGATGCAGCGAAATTTACCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCcg < 2:1220908/150‑1 (MQ=255) ccAGCAAAATGGGGCTGTGGATGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTa < 1:2726092/150‑1 (MQ=255) gCAAAATGGGGCTGTGGATGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGc < 1:2205108/150‑1 (MQ=255) aaaaTGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCgg > 2:2502995/1‑150 (MQ=255) aaaaTGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCgg > 2:2354821/1‑150 (MQ=255) aaaaTGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCgg > 1:2890902/1‑150 (MQ=255) aaaTGGGGCTGTGGATGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGc < 1:163684/150‑1 (MQ=255) tGGGGTTGTGGATGCAGCGAAATTTCCCTC‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAg < 1:1396282/150‑1 (MQ=255) gggCTGTGGATGCAGCGAAATTTCCCTC‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGaa < 1:795859/150‑1 (MQ=255) ggCTGTGGATGCAGCGAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGACGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGaaa < 2:3837789/150‑1 (MQ=255) ggCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGaaa > 1:320689/1‑150 (MQ=255) tgtgGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAAtt > 1:129334/1‑150 (MQ=255) gtgGATGCAGCGAAATTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAAttt < 1:3661884/150‑1 (MQ=255) ggATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAg < 1:680586/150‑1 (MQ=255) gcagcaAAATTTCCCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGcaca < 2:3182318/150‑1 (MQ=255) aGCGAAATTACCCTC‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGt < 1:2044108/150‑1 (MQ=255) gCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGta > 2:230877/1‑150 (MQ=255) cGAATTTTCCCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGtat < 2:3929529/150‑1 (MQ=255) cGAAATTTCCCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGtat < 2:1814640/150‑1 (MQ=255) cGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGtat > 2:1010695/1‑150 (MQ=255) aattttACCTA‑CGCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTCAGCACAGTatat < 2:4096311/147‑1 (MQ=255) aaTTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATc > 1:2651844/1‑150 (MQ=255) aTTTACCTT‑CCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCg < 2:1240817/150‑1 (MQ=255) aTTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCg > 1:428515/1‑150 (MQ=255) aTTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCg < 1:2472748/150‑1 (MQ=255) ttACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGc > 2:595534/1‑150 (MQ=255) aCCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCa < 1:3751245/150‑1 (MQ=255) tt‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCa > 2:881231/1‑150 (MQ=255) tt‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCa > 2:3088886/1‑150 (MQ=255) t‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCaa > 2:1748839/1‑150 (MQ=255) | GCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCAGTTTAGCGCGGTGGAGCAGGACGATCAGCGCAGCAGTTATCAACTG‑AAATCCCAGCAAAATGGGGCTGTGGATGCAGCGAAATTTACCTT‑CACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACA > AP012306/800526‑800824 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |