New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP012306 644102 =389 (1.290)25 (0.080)
+G		 13/296 19.5 6.7% noncoding (1/76 nt) lysZ tRNA‑Lys
?AP012306 = 2073541 309 (1.030)intergenic (+1/‑46) valX/valY tRNA‑Val/tRNA‑Val
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCGTCTCGCCCTTCGGGCCGTTGCTAACGCAACGTTATCCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP012306/644250‑644102
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCACTTCTCAATTTCTTGCTAC  <  AP012306/2073541‑2073445
                                                                                                                                                     |||                                                                                                 
TTCGTCTCGCCCTTCGGGCCGTTGCTAACGCAACGTTATCCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑G                                                                                                   >  2:96978/1‑150
  CGTCTCGCCCTTCGGGCCGTTGCTAACGCAACGTTATCCTTCACGTTCTCCACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGa                                                                                                 >  2:2875961/1‑149
           CTTCGGGCCGTTGCTAACGCAACGTTATCCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGAGGGGGGTGA                                                                                        >  2:3996925/1‑150
             TCGGGCCGTTGCTAACGCAACGTTATCCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGAGGGGGGTTATG                                                                                      >  2:2117858/1‑150
                       GCTAACGCAACGTTATCCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGAGGGGGGTGATCAGGGGgacgt                                                                            >  2:2509061/1‑145
                                 CGTTATCCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACC                                                                  >  2:541443/1‑150
                                                     cCCAGCATCCACTTTAAAATTGGTGGGTCGTGCAGGATTCGACCCTGCGACCAATTGATAAAAAGTCAACTGCTCTACCAACTGAGCTAACGCCCG‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTG                                              <  2:2674709/149‑1
                                                              gattttaAAATTGGTGGGTCGTGCAGGATTCGACCCTGCGACAAATTGATAAAAAGTCAACTGCTCTCCCACCTGAGCTAACGCCCG‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAG                                     <  2:680589/143‑1
                                                               attttaAAATTGGTGGGTCGTGCAGGATTCGACCCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGCCCC‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGC                                    <  2:1799459/144‑1
                                                                 gttaAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGCCCC‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTG                                  <  2:3278449/146‑1
                                                                    aAAATTGGTGGGTCGTGCAGGATTCGACCCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACGGAGCTAACGACCCG‑GGTGGTGGGTGATGCCGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAG                                <  2:10483/149‑1
                                                                    aAAATGGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATAAAAAGTCACCTGCTCTCCCACCTGAGCTAACGCCCG‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGC                               <  2:3627616/149‑1
                                                                      AATGGGGGGGTCGTGCAGGATTCGACCCGGCGCCAAATTGATAAAAAGTCAACGGCTCTCCCACCGGAGCTACCGCCCG‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTA                             <  2:2165407/150‑1
                                                                       ATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAA                            <  1:3661512/150‑1
                                                                        tgGGTGGGTCGTGCAGGATTCAAACTGGCGACCAATTGATAAAAAGTCAACTCCTCTCCCACCTGAGCTACCGCCCC‑‑GGTGGTGGGTGACGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAAT                           <  2:245971/148‑1
                                                                        cgGGTGGGTCGTGCAGGATTCGACCCGGCGACAAATTGATTAAAAGTCAACTGCTCTCCCAACTGAGCTAACGCCCC‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAAT                           <  2:2129093/148‑1
                                                                        TTGGGGGGTCGGGCGGGATTCGAACCTGCGCCAAATTGATTAAAAGTCAACGGCTCTACCAACGGAGCTAACGCCCG‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAAT                           <  2:2908219/150‑1
                                                                         TGGTGGGTCGTGCAGGATTCGACCCTGCGACAAATTGATAAAAAGTCAACTGCTCTCCCAACTGAGCAAACGCCCG‑‑GGTGGGGGGTGATGAGGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATC                          <  2:1918910/150‑1
                                                                          gggGGGTCGTGCAGGATTCGAACCTGCGACAAATTGATAAAAAGTAAACTGCCCTCCCAACTGAGCAAACGCCCC‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCA                         <  2:1165714/147‑1
                                                                          GGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCA                         >  1:3063758/1‑150
                                                                          GGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCA                         >  1:1849690/1‑150
                                                                          GGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCA                         >  1:422988/1‑150
                                                                            TGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACC                       <  2:3250884/150‑1
                                                                             GGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCC                      >  1:2286082/1‑150
                                                                                                   aCGACCAATTGATGAAAAGTCAACTTTTCAACAAACAGAGCTAAGGCCCCAAAGTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCACTTCTCAATTTCTTGCTAC  <  2:3181280/149‑1
                                                                                                                     GTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑GGTG                                                                                                <  2:3824805/36‑1
                                                                                                                                                     |||                                                                                                 
TTCGTCTCGCCCTTCGGGCCGTTGCTAACGCAACGTTATCCTTCACGTTCTCTACCAGTAACCACCTTTAAATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP012306/644250‑644102
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGTGGGTGATGACGGGATCGAACCGCCGACCCCCTCCTTGTAAGGGAGGTGCTCTCCCAGCTGAGCTAATCACCCACTTCTCAATTTCTTGCTAC  <  AP012306/2073541‑2073445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.