Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AP012306 | 1,944,288 | 0 | A | C | 32.2% | 485.1 / 53.3 | 237 | G361G (GGT→GGG) | menE | o‑succinylbenzoate‑CoA ligase |
Reads supporting (aligned to +/- strand): ref base A (109/51); new base C (0/76); total (109/128) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.49e-28 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 309 total aligned reads displayed.
ACCCATTCACTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCGTTACGCCAGTAACCTTCTGC > AP012306/1944139‑1944434 | aCCCATTCACTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATa > 2:2032757/1‑150 (MQ=255) aCCCATTCACTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATa > 2:4115360/1‑150 (MQ=255) cATTCACTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑ccc < 1:2698521/150‑1 (MQ=255) cATTCACTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑ccc < 2:870207/150‑1 (MQ=255) aTTCACTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCct < 1:486510/150‑1 (MQ=255) ttCACTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCctc < 1:2594654/150‑1 (MQ=255) ttCACTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCctc < 2:4677495/150‑1 (MQ=255) tCACTAAGATCAACGCTCTCGTGGTCATACTCCTTCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCctct < 1:2019810/150‑1 (MQ=255) cACTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCtctc < 2:127050/150‑1 (MQ=255) cACTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCtctc > 1:2987703/1‑150 (MQ=255) aCTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTcc < 2:2283135/150‑1 (MQ=255) aCTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTcc > 1:4151351/1‑150 (MQ=255) aaGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGcc > 1:4660914/1‑150 (MQ=255) aGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCa < 1:380393/150‑1 (MQ=255) cAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACCCCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTga < 1:63427/150‑1 (MQ=255) cAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTga > 2:1571360/1‑150 (MQ=255) cAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTga > 2:4764382/1‑150 (MQ=255) aaCGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTgaa > 1:3247977/1‑150 (MQ=255) gCTCTCGGGTTCATACTCCATCCCCGCCACCGCTCGATGCCCAACCTCCTTGTCGGCAACGGGGACGATAAACCCCTGCAAAACCGCAGGATGTGCACCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTgaagaa < 2:1337544/150‑1 (MQ=255) ctctCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCACCGGGGACGATAAACACCTGAAAACCCGCAGGATGTGCAGCAATTACGCGCTCGATTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAAt < 2:2444215/150‑1 (MQ=255) cgggctCACACTCGATCCCCCCCACCGCTCGATGCCCAATCTCATTGTCGACAACGGGGAGGTGAAACCCCTCAAAAACCGCAGCATGTGCAACATTTACGCCCCGGTTTTCTTCCGGTTAAATC‑CCCTCTCCGCCACTGAAGAATAGAt < 2:3300074/145‑1 (MQ=255) tGGTCATCCCCCACCACCGCCCCCGGGCGATGACCAAACTCCTTGTCGGCAACGGGGAAGAAAAACCCCTGCAAACCCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTAAATC‑CCCTCTCCGCCACTGAAGAATAGATTg < 2:4480032/150‑1 (MQ=255) gttCATACTCCTTCCCCGCCCCCGTTCGATGCCCAAACCCCTTGTCGGCAACGGGGACGAAAAACCCCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCAGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGt < 2:907402/148‑1 (MQ=255) gTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTc < 1:2805211/150‑1 (MQ=255) cATCCTCCATCCCCGCCACCGGTCGATGACCAACCTCCTTGTCGGCAACGGGGACGATAACCACCTGCAAAACCGCAGGATGTGCAGCAATTACGCCCTCGCCTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTa < 2:181065/150‑1 (MQ=255) cATCCTCCATCCCCGCCACCGGTCGATGACCAACCTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAACCCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTa < 2:30157/150‑1 (MQ=255) cATACTCCACCACCGCCACCGGTCGATGACCAACCTCCTTGTCGGCAACGGGGACGATAAACCCCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGCCTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTa < 2:4413860/150‑1 (MQ=255) aaTACTCCATCACCGCCACCGGCCGATGAACAAACTCCTTGTCAGCAACCGGTACGATAAACACCTGCAAAACCGCACGATGTGAAGCAAACACGCGCTCGACTTCTCCCGCCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTa > 2:2142649/2‑150 (MQ=255) aTACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTaa > 2:4976563/1‑150 (MQ=255) tACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTaaa < 1:691539/150‑1 (MQ=255) ccTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAAc < 1:2505521/149‑1 (MQ=255) aCTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAAc < 1:4960450/150‑1 (MQ=255) aCTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAAc > 2:1101087/1‑150 (MQ=255) tcaaTCCCCGCCACCGGTCGATGACCAACCTCCTTGTCGGCAACGGGGACAATAAACCCCTGCAAAACCGCAGGATGTGCAGCAATTACGCCCTCGTCTTCTTCCGGGTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGt < 2:3134735/147‑1 (MQ=255) tCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGt > 1:1572826/1‑150 (MQ=255) cccacccccGCCACCGGGCGATGCCCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCCCTCCGCCACTGAAGAATAGATTGTCTAAACGt < 2:2663311/143‑1 (MQ=255) ccATCACCGCCACCGGTCGATGACAAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTc < 1:4400944/150‑1 (MQ=255) tCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGa < 1:101788/150‑1 (MQ=255) ccccGCCACCGGTCGATGACCAACCCCCTTGTCGGCAACGGGGACGATAAACCCCTCCAAACCCGCAGGATGTGCAGCATTTCCGCGCTCGACTTCTCCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGAc < 2:2938810/148‑1 (MQ=255) gCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACCCCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATg < 1:2267267/150‑1 (MQ=255) ccACCGGTCGAGGCCCAACCTCCTTGTCGCCAACGGGAACTATAACCCCCTGTAAAGCCGCAATATGTGCAAAAATTACGCTCCCCCCTTCTTCCGGTTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATgg < 2:458147/150‑1 (MQ=255) cACCGCTCAATGACAAACCCCCTTGTCGGCAACGGGGACGATAAACTCCTGCAAAACCGCAGGAGGTGAAGCATTTACCCGTTGGTCTTCTTCCGGCCGAATC‑CCCTCCCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGt < 2:2601134/150‑1 (MQ=255) aCCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTc < 1:1442901/150‑1 (MQ=255) cGATGACCAACCTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAACCCGCAGGATGTGCAGCAATTCCGCGCTCGACTTCTTCCGGCTAAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTg < 2:1048545/150‑1 (MQ=255) tGACCAAACTCCTTGTCGGCAACGGGGACGATAAACCCCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCa < 2:4034672/150‑1 (MQ=255) aCCAACCCCCTTGTCGGCAACGGGGACGATAAACCCCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGTCTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCAtt < 2:660072/150‑1 (MQ=255) aCCAAACTCCTTGTCGGCAACGGGGACGATAAACCCCTGCAAAACCGCAGGATGGGCAGCAATTACGCGCTCGATTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCAtt < 2:4738414/150‑1 (MQ=255) cAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTAt < 1:883419/150‑1 (MQ=255) aaCTCCTTGTCGGCAACGGGGACGATAAACCCCTGCAAAACCGCAGGATGTGCAGCAATTCCGCGCTCGACTTCTCCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGc < 2:812223/150‑1 (MQ=255) tCGGCAACGGGGACGATATACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGATTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACcg < 2:4367258/150‑1 (MQ=255) tCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACcg > 2:2504793/1‑150 (MQ=255) gcGGCACCGGGGCCGATAACCACTTGCAAAACCGCAGAATGTGCAGCATTTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTGTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACcg < 2:3274067/149‑1 (MQ=255) ggCAACGGGGACGATAAACCCCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACcgcg < 1:4311593/150‑1 (MQ=255) ggCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACcgcg < 1:2344785/150‑1 (MQ=255) cAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGAt > 1:4094714/1‑150 (MQ=255) ggggACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATcgcg < 1:2871368/150‑1 (MQ=255) cGATAAACCCCTACAAACCCGCAGGATGGGCAGCAGTTACGCGCTCGCCTTCTCCCGGCTGAATC‑CCCCCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCgcgtag < 2:3884537/150‑1 (MQ=255) cGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCgcgtag < 1:3178280/150‑1 (MQ=255) gATAAACCCCTACAAAACCGCAGGATGTCCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCgcgtagc < 2:1650552/150‑1 (MQ=255) aaCACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTAc > 1:4561165/1‑150 (MQ=255) cacCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCa > 2:1866941/1‑150 (MQ=255) acCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAg > 1:2402053/1‑150 (MQ=255) ccTGCAAACCCGCAGGATGTGCAGCAATTACGCGATCGATTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGc < 1:2432215/150‑1 (MQ=255) cTGCAAACCCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTCCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGcc < 2:3961164/150‑1 (MQ=255) tgaaaaaCCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCt < 1:3650119/147‑1 (MQ=255) tGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCt > 1:1873137/1‑150 (MQ=255) gCAAACCCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCtt < 1:3746271/150‑1 (MQ=255) gCAAAACCGCAGGATGGGCAGAAATTCCCCGCTCGGCTTCTCCCGG‑TGAAAACCCCCCCCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCtt < 2:215805/150‑1 (MQ=255) aaaaCCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCg > 1:724054/1‑150 (MQ=255) aaCCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTc < 1:1734785/150‑1 (MQ=255) aaCCGAAGGAGGTCCAGCAATTCCGCCCCCGATTTTTTCCGCCTGAATC‑CCCTCACCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTc < 2:4613524/150‑1 (MQ=255) ccGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCAt > 1:1207748/1‑150 (MQ=255) cGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCAtt < 1:3370975/150‑1 (MQ=255) cGCAGGATGTGAAGCAATTACGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCAtt < 2:1465295/150‑1 (MQ=255) gATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCa > 1:572375/1‑150 (MQ=255) aTGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAg > 2:2972521/1‑150 (MQ=255) gtgCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTg > 1:1332207/1‑150 (MQ=255) cagcaATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGaaa > 1:4229640/1‑150 (MQ=255) cagcaATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCCCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGaaa > 2:769357/1‑150 (MQ=255) agcaATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAAc > 2:4863594/1‑150 (MQ=255) gcaATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAAcc < 1:2665558/150‑1 (MQ=255) caATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCa > 1:1152892/1‑150 (MQ=255) caATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCa > 1:3882662/1‑150 (MQ=255) aaaTTACGCGGCGGACTTTTTCGGCCGGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCa < 1:1086427/149‑1 (MQ=255) aTTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGt > 2:2785313/1‑150 (MQ=255) aCGCGCTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGc < 2:3737301/150‑1 (MQ=255) aCGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGc > 1:4813263/1‑150 (MQ=255) gcgcTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGccc > 1:4043441/1‑150 (MQ=255) cgcTCGCCTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCg < 2:2848041/150‑1 (MQ=255) cgcTCGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCg < 1:1666026/150‑1 (MQ=255) cgcTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCg > 1:1516502/1‑150 (MQ=255) cTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCGtt > 2:3179297/1‑150 (MQ=255) cGACTTCTTCCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCGTTAc < 2:4078024/150‑1 (MQ=255) tttctacCGACTGAATC‑CCCTCCCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCGTTACGcc < 1:2204398/149‑1 (MQ=255) ttcttcCGGCTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCGTTACGCCa < 2:3592756/150‑1 (MQ=255) ggCTTAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCGTTACGCCAGTAACCt > 1:3145541/1‑150 (MQ=255) gCTGAATA‑CCCTCTACGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCGTTACGCCAGTAACCtt < 2:4255577/150‑1 (MQ=255) cTGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCGTTACGCCAGTAACCTTc < 2:3443083/150‑1 (MQ=255) tGAATC‑CCGTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCGTTACGCCAGTAACCTTCt < 2:597351/150‑1 (MQ=255) tGAATC‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCGTTACGCCAGTAACCTTCt < 1:2223147/150‑1 (MQ=255) | ACCCATTCACTAAGATCAACGCTCTCGTGGTCATACTCCATCACCGCCACCGGTCGATGACCAAACTCCTTGTCGGCAACGGGGACGATAAACACCTGCAAAACCGCAGGATGTGCAGCAATTACGCGCTCGACTTCTTCCGGCTGAATA‑CCCTCTCCGCCACTGAAGAATAGATTGTCTAAACGTCCGACAATGGTCAGCTTGCCATTATGCATCTCACCGCGATCGCGCGTAGCGTACCAGCCTTCGTCATTAACCAGTGAAACCAGTTGCCCGTTACGCCAGTAACCTTCTGC > AP012306/1944139‑1944434 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |