Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AP012306 | 3,020,670 | 0 | T | G | 31.3% | 334.5 / 21.8 | 198 | K195N (AAA→AAC) | glgC | glucose‑1‑phosphate adenylyltransferase |
Reads supporting (aligned to +/- strand): ref base T (107/29); new base G (62/0); total (169/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.32e-05 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
Only 100 of 305 total aligned reads displayed.
ATCAAATCTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGAGTAGTCTTGCTT > AP012306/3020521‑3020819 | aTCAAATCTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGt < 1:3800468/150‑1 (MQ=255) cAAATCTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTGGCAGGgtt > 2:1045806/1‑150 (MQ=255) cAAATCTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGttt < 1:1143041/150‑1 (MQ=255) cAAATCTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTTGCAGGgtt > 2:3085166/1‑150 (MQ=255) cAAATCTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGgtt > 2:3437623/1‑150 (MQ=255) aaaTCTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGtttt < 2:2614676/150‑1 (MQ=255) aaaTCTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTTGCAGGgttt > 2:2878557/1‑150 (MQ=255) aTCTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGGTTTTc > 2:4200080/1‑150 (MQ=255) tCTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTTGCCGGgttttta > 1:3554373/1‑148 (MQ=255) cTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑aa < 2:4766242/150‑1 (MQ=255) gCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGaa < 2:4845873/150‑1 (MQ=255) ccAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGTTTTTT‑AACGAAt > 2:68062/1‑150 (MQ=255) ccAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGGTTTTT‑CACGAAt > 2:2835000/1‑150 (MQ=255) cAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAAtt < 1:2821854/150‑1 (MQ=255) cAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAAtt > 1:4298760/1‑150 (MQ=255) aaGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCg < 1:627245/150‑1 (MQ=255) aaGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCg < 1:2270549/150‑1 (MQ=255) aaGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCg > 1:1808254/1‑150 (MQ=255) gTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTT‑AACGAATTTGAt > 1:1369312/1‑150 (MQ=255) gTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAAt < 1:983991/150‑1 (MQ=255) gTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGTTTTTC‑CACGAATTCGATAAt > 1:3750671/1‑150 (MQ=255) tGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCGATAAtt > 1:317048/1‑150 (MQ=255) ggCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCGATAAttt > 2:4430533/1‑150 (MQ=255) ggCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGCTTTTC‑AACGAATTCGATAAttt > 2:4277572/1‑150 (MQ=255) ggCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGTTTTTT‑AACGAATTTGATAAttt > 1:918035/1‑150 (MQ=255) gCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAAtttt < 2:800862/150‑1 (MQ=255) gCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAAtttt > 1:2360653/1‑150 (MQ=255) cTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCGATAATTTTa > 1:858420/1‑150 (MQ=255) aGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGt < 1:2074673/150‑1 (MQ=255) gTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGtt < 2:1805849/150‑1 (MQ=255) gTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGGTTTTC‑AACGAATTCGATAATTTTATCGtt > 2:4569489/1‑150 (MQ=255) gTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGATTAGCAGGTTTTTT‑AAACAATTTGTTAAtttttttcat > 2:958589/1‑144 (MQ=255) ctcATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTtttc > 2:3203639/1‑150 (MQ=255) cATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCtcat > 1:257109/1‑150 (MQ=255) aTCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCtcatc < 1:1522668/150‑1 (MQ=255) gATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCg > 1:1915402/1‑150 (MQ=255) aTCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGc < 1:756236/150‑1 (MQ=255) tCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGGTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGcc > 2:665603/1‑150 (MQ=255) cGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCa > 1:3642091/1‑150 (MQ=255) gTCTTCTCCCAGCAGTTCATAAAGATAGTCGGCGTAAAAGACGAAGACCCCCATCCCCGCAAGAGTTTTGCTCGGATCGTTCGGCATTGACGGGGGTTTAGCGGTTTTTTC‑AACAAATTCGATAATTTTATCGTTCTCATCACCCGCCAt < 2:3941195/150‑1 (MQ=255) cttcttCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATaa > 1:4163097/1‑150 (MQ=255) cttcttCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATaa > 1:1434949/1‑150 (MQ=255) ttcttcCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAAc > 2:2188008/1‑150 (MQ=255) tcttcCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGGTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACg > 2:3733861/1‑150 (MQ=255) cttcCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGc > 1:3446518/1‑150 (MQ=255) cagcagTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGTTTTTT‑AACGGATTCGGTAATTTTTTCGTTCTCATCAACCGCCATAACGCCaaa > 2:2705498/1‑150 (MQ=255) agTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTT‑AACGAATTCGATAATTTTATCGTTCTCATTAACCGCCATAACGCCAAATGCg > 2:4292830/1‑150 (MQ=255) gTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTT‑AACGAATTTGGTAATTTTTTCGTTCTCATCAACCGCCATAACGCCCAATGCgg > 2:866262/1‑150 (MQ=255) tCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCGATAATTTTTTCGTTCTCATCAACCGCCATAACGCCAAATGCGGAg > 2:1304514/1‑150 (MQ=255) cAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGGTTTTT‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGcttc > 2:3455052/1‑150 (MQ=255) aGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGgttct > 2:3629717/1‑150 (MQ=255) aGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGcttct > 1:3941685/1‑150 (MQ=255) aGATAGTCGGCGAAAAAGAGGTAGACCCCCATCCCCGCCAGAGTTTTCCTCGGTTCGTTCGGCTTTGGGGGGGGTTTAGCATTTTTTAC‑AACAAATTCTATATTTTTTTCTTTCTCATCACCCGCCATAACGCCAAATGCGGAGGcttct < 2:3479048/150‑1 (MQ=255) gATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCCAATTCGGAGGcttttt > 2:1359028/1‑150 (MQ=255) tAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCa > 1:1011020/1‑150 (MQ=255) ggaaaaaaaGACGTAAACACCCATCCCCGCCAGATTTTTGCGGGGATTGTTCGGCATTGGGGGGGGGTTAGCAGTTTTTCC‑AAAAAATTCGATATTTTTTTCTTTCTCAAAACCCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCgg < 2:4629628/144‑1 (MQ=255) ggCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCgg > 1:4624222/1‑150 (MQ=255) ggCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCgg > 1:2515691/1‑150 (MQ=255) gTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTT‑AACGAAATCGATAATTTTTTCGTTCTCATCAACCGCCATAACGCCCAAAGCGGAGGCTTCTTCAATCGGGAc > 2:3392622/1‑150 (MQ=255) gTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTAc > 1:2203647/1‑150 (MQ=255) aaaGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTgg > 1:2662407/1‑150 (MQ=255) aGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCa > 1:1261482/1‑150 (MQ=255) aGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑CACGAATTCGATAATTTTTTCGTTTTCATCAACCGCCATAACGCCAAATGCTGAGGCTTCTTCAATCGGttgttgcc > 2:1605296/1‑143 (MQ=255) cGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATAc > 1:445157/1‑150 (MQ=255) tAGATCCCCACCCTCGCGAGAGATTTGCTCGGTTCGTGGGGTATTGGGGGGGGGTTAGCATTTTTTAC‑AAAAATTTCAATTTTTTTATCTTTCACATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACaa < 2:2977786/150‑1 (MQ=255) aGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAg > 2:1244143/1‑150 (MQ=255) gATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTTGCAGGGTTTTC‑AACGAATTCGATAATTTTTTCGTTCTCATCAACCGCCCTAACGCCAAATGCCGAGGCGTCTTCAATTGGTACTGGCATACAAGc > 2:1139895/1‑150 (MQ=255) gATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGc > 1:4541413/1‑150 (MQ=255) gATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACCCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGc > 2:4369553/1‑150 (MQ=255) gATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTTGCAGGTTTTTC‑CACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGc > 1:294442/1‑150 (MQ=255) cccccATCCCCGCCAGATTTTTGCTGGGATCGTTCGGCATTGGCGGGGGGTTAGCAGGTTTTAA‑AAAAAATTCGATATTTTTATCTTTCTCAACAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCaa < 2:2925798/148‑1 (MQ=255) ccATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGTTTTTC‑AACGAATTCGATAATTTTTTCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACT‑GCATACCAGCAACGGt > 1:1180282/1‑150 (MQ=255) aCTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCa > 1:3250311/1‑150 (MQ=255) cAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCCGGGTTTTT‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGGATACAAGCAACGGGGCAACGTgc > 2:4054621/1‑150 (MQ=255) cAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGGGCAACGTgc > 2:1989369/1‑150 (MQ=255) cAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGGTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTgc > 1:2473871/1‑150 (MQ=255) agaTTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATAAAAGCAAAGGGGCAACGTGCGcc > 2:4817913/1‑150 (MQ=255) aTTTGCTCGGATCGTTCGGCATTGACGGCGGGGTAGCAGGGTTTTC‑AACGGATTCGGTAATTTTTTCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCtt > 2:557745/1‑150 (MQ=255) ggATCCTGCGGCGTTGAGGGGGGGTTGGCGCTTTTTAA‑AACGAATCCGTTATTTTTTTCGTTATATACAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACg < 2:158131/150‑1 (MQ=255) gTTCGGCATTGACGGCGGGTTAGCAGGGTTTTT‑AACGAATTCGTTAATTTTATCGTTCTCCTCAACCGCCATAACGCCACATGCGGAGGCTTCTTCAATTGGTACTTGACTACAAGCCACGGTGCAACGTGCGGCCTTTTCGACGTGATc > 2:598864/1‑150 (MQ=255) gCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATaa > 1:3687659/1‑150 (MQ=255) ttggACGGGGGGTTGGGAGTTTTTAC‑AACAAATTCGTTATTTTTTTCTTCCTCACAAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGc < 2:3828258/147‑1 (MQ=255) gagggggggTTAGCAGTTTTTTC‑AACGATTTAGATATTTTTTTCTTTCTAATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATa < 1:2107574/144‑1 (MQ=255) gggggtgTTAGCGGTTTTTCC‑AACAAATTCAATATTTTTATCTTTCCCACCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATAcg < 2:2133135/144‑1 (MQ=255) cggcggGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATAcg > 1:514613/1‑150 (MQ=255) ggcggGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATAcgc > 1:4046132/1‑150 (MQ=255) cggGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGa > 1:2862881/1‑150 (MQ=255) ggTTAGCAGTTTTTTA‑AACGAATTCGATATTTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGagt < 1:3299738/150‑1 (MQ=255) ggTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGagt > 1:3606972/1‑150 (MQ=255) gTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGagta > 2:3065545/1‑150 (MQ=255) ttAGCATGTTTTCC‑AAAGATTTATATTTTTTTATCGTTCTCATCACCCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGagtag < 2:1544239/150‑1 (MQ=255) ttAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGagtag > 2:4714032/1‑150 (MQ=255) tAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGagtagt > 2:3312283/1‑150 (MQ=255) tAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGagtagt > 1:3396905/1‑150 (MQ=255) aGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGAGTAGTc > 2:4532491/1‑150 (MQ=255) gCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGAGTAGTct > 2:355253/1‑150 (MQ=255) cAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGAGTAGTctt > 1:16092/1‑150 (MQ=255) ggtttttaC‑AACGAATTCGATTTTTTTATCCTTCACACCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGAGTAGTcttg < 2:2456062/147‑1 (MQ=255) cagTTTTTCAAACAATTTCAATATTTTTTTCTTTCTCACCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCAACGTGATCGATAAGCATACGCGAGTAGTctt < 2:1428674/148‑1 (MQ=255) tttttC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGAGTAGTcttgctt > 2:2297803/1‑150 (MQ=255) | ATCAAATCTTTGCCAAAGTCGTGGCTGGAGTTCTCATCGCGATCGTCTTCTTCCAGCAGTTCATACAGATAGTCGGCGTCAAAGACGTAGATACCCATACTCGCCAGAGATTTGCTCGGATCGTTCGGCATTGACGGCGGGTTAGCAGGTTTTTC‑AACGAATTCGATAATTTTATCGTTCTCATCAACCGCCATAACGCCAAATGCGGAGGCTTCTTCAATCGGTACTGGCATACAAGCAACGGTGCAACGTGCGCCTTTTTCGACGTGATCGATAAGCATACGCGAGTAGTCTTGCTT > AP012306/3020521‑3020819 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |