| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP012306 | = 2275071 | 207 (0.640) | 48 (0.170) +GTATCAGTCTGCTTCGCAAG |
4/258 | 19.9 | 17.4% | noncoding (1/76 nt) | gltW | tRNA‑Glu |
| ? | AP012306 | = 3597478 | 321 (1.000) | intergenic (+65/‑107) | rrsB/gltT | 16S ribosomal RNA (rrnB)/tRNA‑Glu | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP012306/2274971‑2275071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCACT < AP012306/3597478‑3597435 |||||||||||||||||||| tgatTTTCACTCACAAACCAGCAAGGGGCGCCCCCTAGGGGATTCGACCCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACA < 1:2165115/146‑1 GACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAA > 1:3993306/1‑150 ACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAAT > 2:431974/1‑150 ACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAAT > 1:2775262/1‑150 CTTTCACTCACAAACCAGCAGGTGGCGTCCCCTAGGGGATTCGACCCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATC < 1:3698032/150‑1 CTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATC > 2:2383782/1‑150 CTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATC > 1:470319/1‑150 ttcccCTCACAACCCAGAAAGGGGCGCCCCCTGGGGGATTCGACCCCTTT‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCT < 2:3043221/145‑1 ttcCACTCACAACCCAGAAAGGGGCGCCCCTAAGGGGATTCGACCCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCT < 1:4217601/147‑1 TTTCCCTCACAAACCAGAAAGTGGCCTCCCCTAGGGGATTCGACCCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCT < 2:1748804/150‑1 TTTCCCCCACAACCCAGAAAGTGGCTCCCCTTGGGGGTTTCAACCCCCTG‑TTCCCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCT < 2:2294435/150‑1 TTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCT > 1:1183176/1‑150 TTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCT > 1:1589306/1‑150 TTTCACTCACAAACCAGCAAGTGGCGCCCCCTGGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCT < 1:3300163/150‑1 TTTCACTAACAAACCAGCAAGTGGCGTCCCCGAGGGGATTCGACCCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCT < 1:419548/150‑1 ttctccCACAACCCAGAAGGGGGCGCCCCGTGGGGGTTTCGAGCCTCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTG < 2:3367879/144‑1 TTCACTAACAAACCAGAAAGGGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTG < 1:3291168/150‑1 tccCTCAAAAACCAGCAAGGGGCGCCCCCT‑GGGGAATCGGACCCCCGTTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGT < 1:623980/147‑1 TCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGACCCCTTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGT < 1:2339758/150‑1 TCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGT > 1:1341053/1‑150 TCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGT > 2:1233501/1‑150 TCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGT > 1:2630263/1‑150 TCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGT > 2:4392217/1‑150 TCACTCACAAACCAGCAAGGGGCGTCCCCTAGGGGATTCGACCCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGT < 2:2158787/150‑1 ccCTCAAAAACCAGCAGGGGGCGCCCCCTGGGGGATTCGACCCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTG < 2:210846/148‑1 CACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTG > 2:3917897/1‑150 CACTCACAAACAAGCAGGGGGCGTCCCATAGGGGATCCGACCCCTTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTG < 1:4104433/150‑1 CACTCAAAAACCAGAAGGTGGCGCCCCCTGGGGGTTTCGACCCCTTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTG < 2:53461/150‑1 ACTCACAACCCAGCAAGGGGCGTCCCCTAGGGGATTCGACCCCTTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGT < 1:517552/150‑1 ACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGT > 2:2423607/1‑150 ACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGT > 1:1732809/1‑150 ACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGT > 1:3008783/1‑150 CTCAAAACCCAGCAAGTGGCGTCCCCTAGGGGATTCGACCCCTTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTG < 1:47191/150‑1 CTCAAAACCCAGCAAGTGGCCCCCCCGGGGGGATTCGACCCCCTT‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTG < 2:1619869/150‑1 cCACAAACCAGAAAGTGGCCTCCCCTGGGGGATTCGACCCCTTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGA < 2:4068480/149‑1 aACAAGCCAGCAAGTGGCGCCCCCTGGGGGATTAGTACCCGTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAG < 2:1714129/149‑1 CACAACCCAGCAAGTGGCGTCCCCTAGGGGATTCGACCCCTTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAG < 1:1968113/150‑1 CACAACCCAGAAGGTGGCGCCCCCTAGGGGATTCGACCCCTTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAG < 1:2200089/150‑1 CACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAG > 2:773050/1‑150 aAAACCAGCAAGGGGCGCCCCGAAGGGGATTGGAACCCTTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCA < 1:1194324/149‑1 CAAGCCAGCAAGGGGCCTCCCCTGGGGGATTCAATCCCTTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCA < 2:1122794/150‑1 CAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGACCCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCA < 1:2314757/150‑1 aacCCAGCAAGTGGCCTCCCCGAGGGGATTCGACCCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCAC < 2:1680904/147‑1 AAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCAC > 2:3152204/1‑150 AAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCAC > 1:2043346/1‑150 AACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCTTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCACT < 2:2726202/150‑1 AACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCACT > 2:1582865/1‑150 AACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACGTATCAGTCTGCTTCGCAAGACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCACT > 2:1208976/1‑150 |||||||||||||||||||| CGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTG‑TTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP012306/2274971‑2275071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCTTGCTTTTCACTTTCTATCAGACAATCTGTGTGAGCACT < AP012306/3597478‑3597435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |