| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP012306 | 3,182,861 | 0 | A | C | 24.6% | 339.3 / 13.6 | 130 | L198F (TTA→TTC) | yiaN | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base A (82/16); new base C (0/32); total (82/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.65e-19 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 210 total aligned reads displayed.
ATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATG > AP012306/3182712‑3183009 | attattCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTa < 1:1889274/150‑1 (MQ=255) attCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTAccc < 2:2052116/150‑1 (MQ=255) tCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCg < 1:1301849/150‑1 (MQ=255) tCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCg < 1:2166513/150‑1 (MQ=255) ccccTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGcc < 1:669112/150‑1 (MQ=255) ccccTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGcc < 1:2529038/150‑1 (MQ=255) cccTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGGCTTGCCCCTCGCCTGGTGATTGGCGCCACGCTGCTGCTTGCCTGGTGGTGGGCGGCCCAGCGCCTTAATTTAAccccccc > 2:1306789/1‑149 (MQ=255) ccTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGGATTTCCCCCGGCGTGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGGGGGGCAGGCGCCTTAATTTAACCCCCCAg > 2:2640167/1‑150 (MQ=255) ccTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGGATTGCCCCCGGCATGATTATGGGGGGAACGCCGGTGCTTTCCTGGTGGGGGGGGGGCCGGCGCCTTAATTTATCCCGcccg > 2:1398221/1‑148 (MQ=255) ccTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCCTTTCCCCTCGCATGATGATGGGCGCAACGCTGATGCTTTCCTGGTGGGGGGGGGGCAGGCGCCTTAATTTATCCCCCCAg > 2:515331/1‑150 (MQ=255) ccTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAg < 2:4004742/150‑1 (MQ=255) ttCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCTGGCATGATGATGGGGGCCACGCTGATGCTTTCCTGGTGGTGGGAGGCCAGTCGCCTTAATTTTCCCCCCCCGcc > 2:3911214/1‑149 (MQ=255) tCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGGGGAACGCTGATGCTTTCCTGGTGGTGGGGGGGCCGTCGCCCTTATTTTTCCCCCCAGccc > 2:3270822/1‑148 (MQ=255) ccATTCCTTTTATTTCCTTCGGCTTTTCCAGGGTATTTTCCACCAGTAGGTGTTTTATGGCGGGCATTCCCCCTGGCATGATGATGGGCGAACCCCGGATGCTTTCCTGGTGGGGGGAGGCCAGTCCCTTTAATTTGCCCCGCCAGCaaa < 2:2842529/150‑1 (MQ=255) ccATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGGATTGCCCCCGGGCTGGTGATGGGGGCAACGCTGGTGGTTTCCTTGTGGGGGGGGGCCAGTCGCCCTTATTTACCCCCCCCACaaa > 2:1105059/1‑150 (MQ=255) cATCCCGTTTATTATCTCCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTCCCTGGTAGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCaaaa < 2:3056580/150‑1 (MQ=255) tCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCTTTAATTTCCCCCGCCAGCAAAAAGc < 1:1114530/150‑1 (MQ=255) gTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTTGCCTTTTGATGGGCGGAAACCTTATGCTTTCCTGGTGGGGGGCGGCCAGGCGCCTTTATTTTTCCCCCCCGCAAAAaacaac > 2:100759/1‑150 (MQ=255) attatCTTCGGCGTTTCCAGCGGATTATCCACCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGAGGGGCGCAACGCTGATGCTTACCGGGGGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATg < 2:3471964/150‑1 (MQ=255) attatCTTCGGCGTTCCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGAGGGGCGCAACGCTGATGCTTACCGGGTGGGGGCAGGCCAGTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATg < 2:1726965/150‑1 (MQ=255) ttatCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGGAGTTTCCCCGGCATGATGATGGGCGCAACGCTGATGGTTACCTGGTGGTGGGAGGCCAGCCGCCTTAATTTACCCCGCCCGCCAAAAAAAACG‑ATgg > 2:2777915/1‑149 (MQ=255) tatCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGGATTTCCCCCGGGCTGGTGGTGGGGGCAAAGCTGGTGCTTACCTGGTGGGGGGCGGCCCGTCGCCTTTATTTTACCCCCCAGCCAAAAACAACG‑AAGCa > 2:1825644/1‑150 (MQ=255) tatCTTCAGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCGGGCATGATGAGGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCa < 1:294306/150‑1 (MQ=255) tCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAgg < 1:2453074/150‑1 (MQ=255) cTTCGGCGTTCCCAGCGGATTATCCATCAGTAAGCTTTTTATGGCGGGCATTGCCCCGGCCATGATGTTGGGCGCAACGCTGATGCTTCCCTGGTGGGGGCGGGCCGGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGa < 2:2573709/150‑1 (MQ=255) cGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCAATTTCCCCCGCCTGGTGGTGGGGGGCAAGCTGATGCTTACCTCGGGGGGGCGGGCCCGTCGCCTTTATTTTCCCCCCCCGCCAAAAACAAAG‑AGGCAGGgaaa > 2:3185707/1‑149 (MQ=255) ggCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGGGTTTCCCCCGGGCTGTTGATGGGGGCGAAGCTTATGGTTTCCCGGGGGTGGGGGGGCCGGCGCCTTAATTTAACCCCCCAGCCAAAAACAACA‑ATGGAGGGAAta > 2:592484/1‑149 (MQ=255) tttCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCCCGCATGATGATGGGGGCAACGCTGATGCTTACCTGGTGGGGGCAGGCCAGTCGCCTTAATTTTTCCCCCCCGCCAAAAAAAACG‑ATGCAGGGAAACTggg > 2:3078065/1‑149 (MQ=255) ttCCAGGGTTTTATCCATGATTAGGCTGTTTATGGGGGGCGTGGCCCGGGGTGTGTTGTTGGGCGCACCGCTGATGCTAACGGGGGGGTGGCAGGCCGGTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCa < 2:2265145/150‑1 (MQ=255) tCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTTCCCCGGGATGATTATGGGGGCAACGCTGATGCTTTTCTTGTGGGGGGGGGCCCGTCGCCTTTATTTTTCCCCCCCGCCAAAAAAAACG‑ATGCAGGGAAACTGGCAc > 2:4116149/1‑150 (MQ=255) cAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCActc < 1:1461079/150‑1 (MQ=255) cGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCCGGCATGATGATGGGGGCAACGCTGATGCTTACCTTGGGGGGGGAGGGCAGTCGCCCTTATTTTCCCCCCCACCCAAAAACAAAG‑ATGCAGGGAAACTGGGACTCttt > 2:2936916/1‑150 (MQ=255) ggATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCtttt < 1:585798/150‑1 (MQ=255) ggATTACCCATCAGTAAGTTTTTTATGGCGGGCATGGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTCCCTGGTGGGGGCGGGCCAGTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCtttt < 2:4221661/150‑1 (MQ=255) gATTATCCATCAGTAAGCTGTTTATGGCGGGCATTTCCCCCCGCCTTTTTATGGGGGCAAAGCTGATGCTTTCCCGGGGGGGGGAGGCCCGTCGCCCTTATTTACCCCCCCCGCCAAAAACAACC‑ATGCAGGGAAACTTGCACTCttttt > 2:1363607/1‑149 (MQ=255) tATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGtct < 1:1059591/150‑1 (MQ=255) tATCCATCAGTAAGCTGTTTATGGCGGGCACTTCCCCCCGCGTTATTGTTGGCGCAACGCTGATGGTTTACCAGCGGTGGCGGGCCCGTCGCCTTTATTTTCCCCCCCCCCAAAAAAAAACGCATG‑AGGAAAACTGGCACTCCTTTTtct > 2:4075019/1‑150 (MQ=255) tATCCATCAGTAAGCTGTTTAGGGCGGGCATTGCCCCTGGCATGATGATGGGCGAAACGCTGATGCTTCCCTGGGGGTGGCAGGCCAGTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGtct < 2:1596882/150‑1 (MQ=255) cATCAGTAAGCTGTTTATGGCGGGGATTGCCCCCGGCCTGATGATGGGGGCAACGCTGATGCTTACCTGGTGGGGGGAGGGCAGTCGCCTTAATTTTTCCCCCCCGCAAAAAAAAAAG‑ATGCAGGAAAACTGGGACTCTTTTTTTTCCgg > 2:155191/1‑150 (MQ=255) tCAGTAAGTTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTCCCGGGGGGGGGCAGGCCAGTGGCTTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTa < 2:2124164/150‑1 (MQ=255) cAGTAAGCTTTTTAGGGGGGGCATGCCCCCCGGCCTGAGGTGGGGCCCACCGCTGTGCCTTCCCGGGGGGTGGCGGGCCGGTCCCCTTACTTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTAt < 2:2749564/150‑1 (MQ=255) cAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTAt < 1:2207226/150‑1 (MQ=255) gTAAGCTGTTTAGGGCGGGCATTGCCCCGGGCATGAGGAGGGGCGCAACGCTGATGCTTTCTTGGTGGTGGCAGGCCAGGCGCTTTATTTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCt < 2:2247041/150‑1 (MQ=255) tttATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTg < 1:2689542/150‑1 (MQ=255) ttATGGCGGGCATTGCCCCCGGCATGATGATGGGGGCAACGCTGATGCTTTACTGGTGGGGGGAGGCCAGTCGCCTTTATTTACCCCGCCCGCAAAAAACAACG‑ATTCAGGAAATCTGGCACTCTTTTTTCTCCCGTATCTTGGCGCTGt > 2:2433243/1‑150 (MQ=255) tGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTttc > 1:453878/1‑150 (MQ=255) gCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTttctt > 1:2228849/1‑150 (MQ=255) cGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTttcttc > 1:308522/1‑150 (MQ=255) gggCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTcc > 2:3691619/1‑150 (MQ=255) ggCATTGCCGGGGGCATGATGAGGGGCACACCGCTGATGCTTACCTGGTGGTGGCAGGCCATTCGCTTTAATTCCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCa < 2:1961746/150‑1 (MQ=255) gCCCCGGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGtcatc < 1:1654478/150‑1 (MQ=255) cccTGGCATGATGGGGGGCGCACCGTTGATCCTTCCCGGGGGGTGGGAGGCCAGTCCCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTcatcat < 2:4138770/150‑1 (MQ=255) cccTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTcatcat > 1:2869909/1‑150 (MQ=255) tGGCATGATGATGGGCGCAACGTTGATGCTTCCCGGGTGGTGGCGGCCCAGTCGCCTTATTTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCattat < 1:1951141/150‑1 (MQ=255) cATGTTGAGGGGCCCACCGCTGATGCTCCCCGGGGGGTGGCAGGCCAGCCGCTTAAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTgg < 2:1894311/150‑1 (MQ=255) atgatgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGc > 1:406159/1‑150 (MQ=255) tgatgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCg > 2:1445136/1‑150 (MQ=255) gatgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCgg > 2:3029751/1‑150 (MQ=255) atgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCggg > 1:4167134/1‑150 (MQ=255) atgatgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCggg > 2:3348212/1‑150 (MQ=255) tgatgGGCGCAACGGTGTTGCTTACGTGGTGGGGGGAGGCAAGTCGCTTTATTTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGTGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGt < 2:104832/150‑1 (MQ=255) atgGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGttt > 2:2417751/1‑150 (MQ=255) atgGGCGAAAGGCTGAGGCTTACCGGGTGGGGGCAGGCCAGCCGCTTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGttt < 1:1979113/150‑1 (MQ=255) ggCGCATCGCTGATGCTTACCTGGAGGTGGCAGGCCAGTTGCCTTACTTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCgggagcccc > 2:2498178/1‑144 (MQ=255) ggCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGgttatc > 2:2216659/1‑147 (MQ=255) ggCGAACCGCCGATGCTTGCGGGGGGGGGGCAGGCGGGTCGCTTTATTTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGc < 2:1950557/150‑1 (MQ=255) cgcACCGCTGATGCTTCCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTc < 1:2119754/150‑1 (MQ=255) gcAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTctcctc > 2:2344360/1‑145 (MQ=255) gcAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCttc > 2:723556/1‑148 (MQ=255) gCTGATGTTTACCTGGTGGTGGCGGGCCAGTCGCCTTATTTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCt < 2:435563/150‑1 (MQ=255) gCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTTCCGccc > 2:917036/1‑149 (MQ=255) gATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCGCCTGtt > 1:2811960/1‑150 (MQ=255) tgtttACCGGGTGGTGGCAGGCCAGTCGCTTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTa < 1:3657937/147‑1 (MQ=255) gCTTACCGGGGGGTGGCAGGCCGGTCCCCTAAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTAc < 2:2473996/150‑1 (MQ=255) cTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCGGCTGgttttc > 2:3889994/1‑147 (MQ=255) ttACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTCCTCCCGCCCGGTTTccc > 1:2797806/1‑150 (MQ=255) aCCTGGTGGTGGCAGGCCAGTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCt < 2:3613236/150‑1 (MQ=255) aCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTTCTCCCGCCTGtttttcccc > 1:1202609/1‑144 (MQ=255) aCCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCGGCCCGTTTTccccc > 2:647547/1‑149 (MQ=255) gtggtggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTGCCGGCTGTTTTCCCCCAcccc > 1:489735/1‑148 (MQ=255) tggtggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCCCCCGTTTAcccccccccca > 1:335844/1‑143 (MQ=255) gtggCAGGCCAGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGTAGc < 1:3706170/150‑1 (MQ=255) ggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCGGCCTGTTTTTCCCCAccccagacg > 2:1269279/1‑143 (MQ=255) ggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCGGCCCGTTTTCCCCTTccccaaccc > 1:2983685/1‑143 (MQ=255) ggCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCGCCCGTTTATCCCCAccccaaacc > 2:571107/1‑143 (MQ=255) ggCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTTGCTCCCGCCTGTTTTCCCCTACCCCAGCCggggg > 1:1026511/1‑149 (MQ=255) ggCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTCGGTCCGGGCTGTTTTCCCCCCCCCAAGCCcgggg > 2:295273/1‑149 (MQ=255) aGTCGCCTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGtt < 1:579143/150‑1 (MQ=255) gTCGCTTTAATTTCCCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTtg < 1:1044730/150‑1 (MQ=255) gCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTCCCAGTCATCATTATTGGCGGGGGTTGCTCCCGCCCCTTTTTCCCCCCCCCAGCCCGGGGCGGtgctg > 2:2034496/1‑150 (MQ=255) ccTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTTGCTCCGGCCTGGTTTCTCCCACCGAAACCCGGGGCGTtgctgc > 2:674267/1‑150 (MQ=255) cTTATTTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTgctgct < 2:805394/150‑1 (MQ=255) cTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTTCTCCGGCCCTTTTTCCCCCACCCAAACCCGGGCCGTTgcttct > 2:3759766/1‑150 (MQ=255) cTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTTCGGCCCGCTTTCCCCCCCCCCAGCCGGGGCCGTTgcttct > 1:2075343/1‑150 (MQ=255) cTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCGCCCGTTTTCCCCCACCCAAACCGGGGCCGGTgctgct > 1:3805363/1‑150 (MQ=255) taattttACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCtt < 2:1678997/146‑1 (MQ=255) aaTTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTCTCTCCCGCCTGTTTTCCCCCACCCAAGCCGGGGCCGGTGCTGCTTTc > 1:1734040/1‑150 (MQ=255) tttACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGTTTCCGCCCGTTTTCCCCCACCCACGCCCGGGGCGGTGCTGGtttttt > 2:3715816/1‑147 (MQ=255) ttACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTAt < 1:1369962/150‑1 (MQ=255) ttACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGGTTTGCTCCCCCCCGTTTTACCCTCCCGAAGACGCGGGCGCTAGTGCttttttt > 2:3393627/1‑146 (MQ=255) | ATTATTCCCCCTTCCATTCCGTTTATTATCTTCGGCGTTTCCAGCGGATTATCCATCAGTAAGCTGTTTATGGCGGGCATTGCCCCTGGCATGATGATGGGCGCAACGCTGATGCTTACCTGGTGGTGGCAGGCCAGTCGCCTTAATTTACCCCGCCAGCAAAAAGCAACG‑ATGCAGGAAATCTGGCACTCTTTTGTCTCCGGTATCTGGGCGCTGTTTCTTCCAGTCATCATTATTGGCGGGTTTCGCTCCGGCCTGTTTACCCCTACCGAAGCCGGGGCCGTTGCTGCTTTCTATG > AP012306/3182712‑3183009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |