| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 227011 | NA (NA) | 5 (0.030) | 4/132 | 13.4 | NA | noncoding (403/1542 nt) | ECB_RS01035 | 16S ribosomal RNA |
| ? | NC_012967 | 241819 = | NA (NA) | coding (259/449 nt) | ECB_RS01120 | IS1‑like element IS1A family transposase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 105 total aligned reads displayed.
GCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCTTTG > NC_012967/226986‑227082 | gcgcAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGTGTTGTAAAGTACTTTCAGCGGGGAt < 2:369245/72‑1 (MQ=9)gcgcAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGAt > 1:2887285/1‑72 (MQ=31)gcgcAAGCCGGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGAt < 2:5932122/72‑1 (MQ=14) cncAAGCCTGATGCAGCCATGCCGCGTNTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATg < 1:654986/72‑1 (MQ=17) cgcAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATg > 2:5826382/1‑72 (MQ=32) cgcAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATg < 2:5467739/72‑1 (MQ=32) cgcAAGCCTGACGCAGCCATGCCGCGTGTATGCAGAAGGCCTTCGGGGTGTAAAGTACTTTCTGCGGGGATg > 2:5893814/1‑72 (MQ=11) gcAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGa > 1:5543486/1‑72 (MQ=34) gcAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGa > 1:6071321/1‑72 (MQ=34) gcAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGa > 2:5293055/1‑72 (MQ=34) gcAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGATTGTAAAGTACTTTCAGCGGGGATGa < 2:4152785/72‑1 (MQ=21) cAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGaa > 1:2278886/1‑72 (MQ=34) cAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGaa < 1:6489104/72‑1 (MQ=34) cAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGaa < 1:6524422/72‑1 (MQ=34) cAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGaa < 2:3948676/72‑1 (MQ=35) cAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGaa < 2:1351126/72‑1 (MQ=35) cAAGCATTAGGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGaa < 2:3171053/72‑1 (MQ=11) aaGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCATCGGGGATGAAg > 1:4470947/1‑72 (MQ=25) aaGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAg > 1:3212852/1‑72 (MQ=34) aaGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAg < 1:5482136/72‑1 (MQ=34) aaGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAg < 2:2801282/72‑1 (MQ=35) aGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGTCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAgg < 2:5979082/72‑1 (MQ=25) aGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAACGTACTTTCAGCGGGGGTGAAgg > 2:3189798/1‑72 (MQ=255) aGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAgg > 1:5483327/1‑72 (MQ=34) aGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAgg > 2:4163141/1‑72 (MQ=34) aGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAgg > 1:4744044/1‑72 (MQ=34) gCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCGTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAggg < 2:5215204/72‑1 (MQ=21) gCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGTGGATGAAggg > 1:1452241/1‑72 (MQ=21) gCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAggg > 1:2124959/1‑72 (MQ=34) gCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAggg < 1:2099495/72‑1 (MQ=34) gCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAggg < 1:4955965/72‑1 (MQ=35) gCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGNTGTAAAGTACTTTCAGCGGGGATGAAggg < 2:556093/72‑1 (MQ=21) ccTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGa < 1:6355885/72‑1 (MQ=35) ccTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGa > 2:5923110/1‑72 (MQ=34) cTGATGCAGCCATGCCGCGTGTNTGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAg < 1:2924448/72‑1 (MQ=21) cTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAANGTACTTTCAGCGGGGATGAAGGGAg < 1:732346/72‑1 (MQ=21) cTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCNGGGATGAAGGGAg < 1:2116312/72‑1 (MQ=21) cTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAg < 2:3072940/72‑1 (MQ=34) tGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAGGTACTTTCAGCGGGGATGAAGGGAGt < 2:4425077/72‑1 (MQ=25) tGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGt > 1:4054195/1‑72 (MQ=34) tGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGt < 2:6576727/72‑1 (MQ=35) tGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGt < 1:5726932/72‑1 (MQ=34) gATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTa < 1:6119023/72‑1 (MQ=34) gATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTa < 1:608346/72‑1 (MQ=34) gATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTa > 1:284997/1‑72 (MQ=34) gATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTa < 1:3036965/72‑1 (MQ=34) gATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTa < 1:5051260/72‑1 (MQ=35) gATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTa < 1:4912373/72‑1 (MQ=35) gATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTa < 2:5998119/72‑1 (MQ=34) aTGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGTTTGTAAAGTACTTTCAGCGGGTATGAAGGGAGTaa > 1:4756165/1‑72 (MQ=255) aTGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTaa > 1:5826374/1‑72 (MQ=34) aTGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTaa > 1:3213867/1‑72 (MQ=34) aTGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTaa < 2:5246737/72‑1 (MQ=35) tGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTaaa > 2:4382838/1‑72 (MQ=34) tGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTaaa < 1:4796912/72‑1 (MQ=34) tGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTaaa < 2:2828574/72‑1 (MQ=35) tGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTaaa < 1:4378375/72‑1 (MQ=34) gCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAg > 1:4226688/1‑72 (MQ=34) cAGCCATGCCGCGTGTATGAAGAAGGGCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGt < 2:5495307/72‑1 (MQ=255) cAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGt < 2:3187867/72‑1 (MQ=34) aGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCNGCGGGGATGAAGGGAGTAAAGtt < 1:4263960/72‑1 (MQ=21) gCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGTGAGTAAAGTTa > 1:1215798/1‑72 (MQ=21) gCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTa > 1:607956/1‑72 (MQ=34) gCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTa > 1:3522038/1‑72 (MQ=34) gCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTa > 2:6502976/1‑72 (MQ=34) tcATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTaa < 1:744716/71‑1 (MQ=21) ccATGCNGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTaa < 2:461547/72‑1 (MQ=25) cATGCTGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAAt < 2:2301002/72‑1 (MQ=25) cATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAAt < 2:1224966/72‑1 (MQ=35) cATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAAt < 1:3512999/72‑1 (MQ=34) cATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAAt > 2:6519663/1‑72 (MQ=34) cATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAAt > 2:3779573/1‑72 (MQ=34) cATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAAt < 2:1867616/72‑1 (MQ=35) cATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAAt < 2:4606562/72‑1 (MQ=35) cATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAAt > 1:4977826/1‑72 (MQ=34) aTGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATa > 2:5452195/1‑72 (MQ=34) aTGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAACNACTTTCAGCGGGGATGANNNGAGTAAAGTTAATa > 1:4726023/1‑72 (MQ=255) tGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATAc < 1:5367654/72‑1 (MQ=34) gCCGCGTGTATGAAGACGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTNATAcc > 2:2528308/1‑72 (MQ=19) gCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATAcc < 1:942783/72‑1 (MQ=35) gCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATAcc < 1:6275490/72‑1 (MQ=35) ccGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATAcat < 1:1300648/72‑3 (MQ=21) ccGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCt < 2:4100476/72‑1 (MQ=35) ccGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCt > 1:4484739/1‑72 (MQ=34) ccGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCt < 1:1226533/72‑1 (MQ=35) ccGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCt < 2:5489849/72‑1 (MQ=35) cgcgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCtt < 1:1214215/72‑1 (MQ=35) cgcgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCtt > 2:4498615/1‑72 (MQ=34) cgcgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCtt < 1:2490014/72‑1 (MQ=34) cgcgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCtt < 1:6148152/72‑1 (MQ=34) cgcgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCtt < 1:3556184/72‑1 (MQ=35) cgcgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATCAAGGGAGTAAAGTTAATACCtt > 1:2932853/1‑72 (MQ=21) gcgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCttt < 1:3256191/72‑1 (MQ=34) gcgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCttt < 1:3218608/72‑1 (MQ=35) gcgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCttt < 1:3882219/72‑1 (MQ=34) gcgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCttt < 2:1492103/72‑1 (MQ=35) gcgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCttg > 2:5056131/1‑71 (MQ=21) cgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCTTTg < 2:3553864/72‑1 (MQ=35) cgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCTTTg > 1:2852444/1‑72 (MQ=34) cgTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCTTTg < 1:5031679/72‑1 (MQ=35) | GCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGATGAAGGGAGTAAAGTTAATACCTTTG > NC_012967/226986‑227082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |