| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 1460711 = | NA (NA) | 4 (0.020) | 3/130 | 13.9 | 3.5% | coding (248/449 nt) | ECB_RS07290 | IS1‑like element IS1A family transposase |
| ? | NC_012967 | 1682335 = | 121 (0.640) | coding (193/216 nt) | ydgT | transcription modulator YdgT | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 121 total aligned reads displayed.
GTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAA > NC_012967/1682264‑1682405 | gTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGt < 2:776005/72‑1 (MQ=255)gTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGt < 2:3562665/72‑1 (MQ=255) gctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTcg > 1:3148678/1‑71 (MQ=255) gctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTcc > 1:4748648/1‑72 (MQ=255) gctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTcc > 2:5177922/1‑72 (MQ=255) ctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCg > 2:2777151/1‑72 (MQ=255) ctgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCg > 1:1629555/1‑72 (MQ=255) tgcCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGt < 2:933554/72‑1 (MQ=255) ccGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCt < 2:5418597/72‑1 (MQ=255) cGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTg > 2:3894780/1‑72 (MQ=255) cGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTg > 2:5458820/1‑72 (MQ=255) gATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCNCGGTACCGAAGTCCGTCTgg > 1:2518431/1‑72 (MQ=255) gATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTgg > 1:3491209/1‑72 (MQ=255) gATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTgg < 2:1150400/72‑1 (MQ=255) aTCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGc > 2:5147268/1‑72 (MQ=255) aTCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGc > 1:5884069/1‑72 (MQ=255) aTCAACGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGc < 1:4312143/72‑1 (MQ=255) tCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCa < 2:1458525/72‑1 (MQ=255) cACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCAc > 2:4687032/1‑72 (MQ=255) aCCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACt > 2:1934019/1‑72 (MQ=255) aCCGTCGCGCAGAGCTGGTTTCGGGCGCGCGTTTGTTTGACCTCGGCCAGATACCGAAGTCCGTCTGGCGCt < 1:662610/72‑1 (MQ=255) cGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTAt < 2:5816162/72‑1 (MQ=255) gTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATg < 1:6486769/72‑1 (MQ=255) gTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATg > 1:4835194/1‑72 (MQ=255) gTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATg < 1:1060445/72‑1 (MQ=255) tCNCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGt < 2:545746/72‑1 (MQ=255) cgcgCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTc > 1:1403903/1‑72 (MQ=255) cgcgCAGAGCTGGTTTCTGGCGGGCGTTTCTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTc < 1:872039/72‑1 (MQ=255) gcgcAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTcc > 1:2312122/1‑72 (MQ=255) cgcAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCa > 2:5930751/1‑72 (MQ=255) gcAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCaa > 1:1213219/1‑72 (MQ=255) cAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAAt > 2:1193944/1‑72 (MQ=255) cAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAAt < 2:3473199/72‑1 (MQ=255) cAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCAAAt < 1:4625051/72‑1 (MQ=255) agagCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATa > 2:4198659/1‑72 (MQ=255) gagCTGGTTTCTGGCGTGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATaa < 2:2901675/72‑1 (MQ=255) agCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTc > 1:5202218/1‑65 (MQ=255) agCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTc < 2:5202215/65‑1 (MQ=255) gCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATaaag < 2:1110981/72‑1 (MQ=255) ggTTTCTGGCGGGCGTTTGTTTGACCTCGTCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATaaaggaa > 2:1032783/1‑72 (MQ=255) ggTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATaaagaaa < 1:1667643/72‑1 (MQ=255) ggTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCCGGCACTATGTCCAATaaagaaa > 2:3510348/1‑72 (MQ=255) gTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATaaagaaag > 2:6231787/1‑72 (MQ=255) gTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAACTCCGTCTGGCACTATGTCCAATaaagaaag > 1:2857857/1‑72 (MQ=255) tttCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCCCTATGTCCAATAAAGAAAGt > 2:6604485/1‑72 (MQ=255) ttCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTa > 1:6077062/1‑72 (MQ=255) cTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGc > 2:5114919/1‑72 (MQ=255) gcgggtgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGAt < 2:3217216/72‑1 (MQ=255) gcgggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGAt < 2:1917665/72‑1 (MQ=255) gcgggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGAt > 1:4634420/1‑72 (MQ=255) cgggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATc > 2:3502106/1‑72 (MQ=255) cgggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATc < 1:2166584/72‑1 (MQ=255) cgggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATc < 1:3065981/72‑1 (MQ=255) cgggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATc > 2:6083180/1‑72 (MQ=255) gggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCg > 1:5185183/1‑72 (MQ=255) gggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCg < 1:3565661/72‑1 (MQ=255) ggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCgg > 1:1929714/1‑72 (MQ=255) ggcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCgg < 1:5846743/72‑1 (MQ=255) gcgTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGt < 2:5635597/72‑1 (MQ=255) gcgTTTGTTTGACATCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCggg > 2:6025424/1‑71 (MQ=255) gtttgtttGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTta > 1:3396885/1‑72 (MQ=255) tgtttgACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATaa > 1:6575141/1‑72 (MQ=255) tgtttgACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATaa > 1:4130532/1‑72 (MQ=255) tgtttgACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATaa < 1:1702809/72‑1 (MQ=255) tgtttaACCTCGGCCAGGNACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATaa < 1:2559761/72‑1 (MQ=255) ttgACCTCGGCCAGGNACNGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAg < 2:4728980/72‑1 (MQ=255) aCCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCt > 2:3006187/1‑72 (MQ=255) aCCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCt > 2:3516753/1‑72 (MQ=255) ccTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCtt < 2:5393024/72‑1 (MQ=255) ccTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCtt > 1:3847555/1‑72 (MQ=255) cTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTta < 1:140766/72‑1 (MQ=255) cTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTta > 2:6631324/1‑72 (MQ=255) cGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTtata > 2:4757169/1‑72 (MQ=255) cGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCATtata < 1:5643363/72‑1 (MQ=255) ggCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTataa > 1:3067556/1‑72 (MQ=255) gCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTtatact > 1:271900/1‑70 (MQ=255) gCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTataat < 1:5956098/72‑1 (MQ=255) ccAGGTACCGAAGTCCGTCTGGNACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTataata < 1:1836045/72‑1 (MQ=255) ccAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTataata < 2:1917600/72‑1 (MQ=255) aGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAAc < 2:4033369/72‑1 (MQ=255) aGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAAc > 2:3838682/1‑72 (MQ=255) aGGAACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAAc > 1:104659/1‑72 (MQ=255) ggTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACg > 1:4431637/1‑72 (MQ=255) ggTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACg < 2:4392492/72‑1 (MQ=255) ggTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACg < 2:6212502/72‑1 (MQ=255) gTACCGAAGTCCGTNNNGCACTATGTCCAATAAANAGAGTAGCGATCGGTTATAAAAGCCTTATAATAACGc < 1:4723705/72‑1 (MQ=255) gTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGc < 2:1761728/72‑1 (MQ=255) gTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGc < 1:6588856/72‑1 (MQ=255) gTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGc < 1:6339105/72‑1 (MQ=255) tACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGcc < 2:5879474/72‑1 (MQ=255) tACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGcc > 1:781559/1‑72 (MQ=255) tACCGAAGTCCGTCTGGCACTATGTCCAANAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGcc > 2:567562/1‑72 (MQ=255) aCCGAAGTCCGTCTGGGACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAACAACTccc > 1:684565/1‑72 (MQ=255) aCCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGccc < 2:4774242/72‑1 (MQ=255) aCCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTNATAAAAGCCTTATAATAACGccc < 1:4282523/72‑1 (MQ=255) gAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTa < 2:6444744/72‑1 (MQ=255) gTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAGAGCCTTATAATAACGCCCCTaaaa < 1:411825/72‑1 (MQ=255) gTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTaaaa > 2:5424895/1‑72 (MQ=255) gTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTaaaa < 2:4863168/72‑1 (MQ=255) gTCCGTCTGGCACTATGGCCAATAAAGAAAGTAGCGATCGGTTATGAAAGCCTTATAACAACGCCCCTaaaa > 1:2432915/1‑72 (MQ=255) | GTGCTGCCGATCACCGTCGCGCAGAGCTGGTTTCTGGCGGGCGTTTGTTTGACCTCGGCCAGGTACCGAAGTCCGTCTGGCACTATGTCCAATAAAGAAAGTAGCGATCGGTTATAAAAGCCTTATAATAACGCCCCTAAAA > NC_012967/1682264‑1682405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |