| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 114280 = | 187 (0.850) | 45 (0.270) +ACCGGCTTGGGCGTTA |
7/110 | 11.9 | 27.7% | intergenic (+43/+173) | mutT/yacG | 8‑oxo‑dGTP diphosphatase MutT/DNA gyrase inhibitor YacG |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTTTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/114318‑114280‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGTCGGATGCGGCGTAAACGCCTTATCCGACCTA < NC_012967/4275216‑4275181 |||||||||||||||| gTTTAGCCCGGATAAGACGCGCCGGCTTCGCATCGGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGT < 1:1451200/71‑1 AGGCCTGATAAGACGCGCCAGCGTCACATCAGGCAACCGGCTTGGGCGTCAGATGTCGGTGGCGGTGTAAAC > 1:4070315/1‑72 GCCTGATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGGGGAAACGC > 1:1374083/1‑72 TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGG > 2:7687911/1‑35 TGATAAGACGCGCCAGCGTCGCATCAGGCAACCGG < 1:7687912/35‑1 ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGAAGCGGCGTAAACGCCTTAT > 2:6144804/1‑72 ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCG > 2:2299688/1‑41 ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCG < 1:2299688/41‑1 ATAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGG > 1:7016333/1‑38 TAAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTAAACGCCTTATC > 2:1397465/1‑72 AAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGA > 2:6870281/1‑51 AAGACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGA < 1:6870282/51‑1 GACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGGTGCGGGGTAAACGCCCTTTCCGA > 2:1461561/1‑72 GACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTAA < 1:2307271/59‑1 GACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTAA > 2:2307271/1‑59 GACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTC > 2:1998349/1‑46 GACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTC < 1:1998349/46‑1 ACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCG < 1:6082411/46‑1 ACGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCG > 2:6082410/1‑46 CGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGGTGCCGCGGAAACCCCCTATCCCACC > 1:3840452/1‑72 CGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTC < 1:3251787/44‑1 CGCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTC > 2:3251787/1‑44 GCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGAT > 2:3853834/1‑47 GCGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGAT < 1:3853835/47‑1 CGCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGAGGTCGGATGCGGCGTAGACGCCTTATCCAACCca > 1:6429935/1‑70 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG > 2:4648508/1‑48 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG < 1:4648509/48‑1 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGC < 1:107285/47‑1 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGC > 2:107285/1‑47 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAG > 1:5406572/1‑36 GCCAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAG < 2:5406571/36‑1 CAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG < 2:7415218/46‑1 CAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG > 1:7415219/1‑46 CAGCGTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGA > 1:3732206/1‑42 GTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA < 2:1824431/47‑1 GTCGCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA > 1:1824431/1‑47 GCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA < 2:1172038/44‑1 GCATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA > 1:1172038/1‑44 CATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCG < 1:4861810/41‑1 CATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCG > 2:4861809/1‑41 CATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCG < 2:3442975/41‑1 CATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCG > 1:3442975/1‑41 ATCAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG < 2:557478/37‑1 CAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG < 1:4833916/35‑1 CAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG > 1:3155965/1‑35 CAGGCAACCGGCTTGGGCGTTAGATGTCGGATGCG < 2:3155965/35‑1 AGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA > 2:6286312/1‑39 AGGCAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTA < 1:6286313/39‑1 CAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTAA > 1:4970492/1‑37 CAACCGGCTTGGGCGTTAGATGTCGGATGCGGCGTAA < 2:4970491/37‑1 |||||||||||||||| CTTTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/114318‑114280‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGTCGGATGCGGCGTAAACGCCTTATCCGACCTA < NC_012967/4275216‑4275181 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |