| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 2374606 | 130 (0.590) | 47 (0.270) +CCGGCTTGGGCGTTA |
6/112 | 12.5 | 32.6% | intergenic (‑251/+8) | cvpA/dedD | colicin V production protein/cell division protein DedD |
| ? | NC_012967 | = 4275216 | 117 (0.530) | intergenic (+489/+42) | gltP/yjcO | glutamate/aspartate:proton symporter GltP/Sel1 family TPR‑like repeat protein YjcO | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 131 total aligned reads displayed.
AAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGC > NC_012967/2374535‑2374677 | aaaCCCCTTACCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑aa < 1:1847358/72‑1 (MQ=255) aaCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAg > 2:4520583/1‑72 (MQ=255) aCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGa > 1:6982353/1‑72 (MQ=255) aCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGa > 2:4332508/1‑72 (MQ=255) aCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCCCCAGCGTCGCCTCAGGC‑CAGa > 2:4907035/1‑72 (MQ=25) cGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCATGC‑AAGAc < 2:1135008/72‑1 (MQ=255) gCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGAcc > 1:4305124/1‑72 (MQ=255) gCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGAcc > 1:1887933/1‑72 (MQ=255) ttATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTNGCATCAGGC‑AAGACCGTa > 1:2973416/1‑72 (MQ=255) ttATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTa > 2:2604979/1‑72 (MQ=255) ttATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTa > 2:3739659/1‑72 (MQ=255) tCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTa > 1:3829458/1‑72 (MQ=255) ccGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTAGTaa > 1:4987111/1‑72 (MQ=255) cGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAAt > 2:1847135/1‑72 (MQ=255) gACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCNGGC‑AAGACCGTATTAAtt > 1:2978126/1‑72 (MQ=255) gACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGCGCGTATTAAtt > 2:184668/1‑72 (MQ=255) gACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAAtt > 2:4918035/1‑72 (MQ=255) aCCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTc > 2:238444/1‑72 (MQ=255) ccTACGGTTCTACCCCTGCGTAGGCCTGATAAGATGGGGGAGCGGCGGATCAGGC‑AAGATAGTATTGAtttg > 2:6503892/1‑70 (MQ=16) ccTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCg > 2:2009889/1‑72 (MQ=255) cTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCgg > 1:6101425/1‑72 (MQ=255) tACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTCATTCGGc > 1:1014490/1‑72 (MQ=255) tACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGc > 1:5117204/1‑72 (MQ=255) aCGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCg > 1:4105954/1‑72 (MQ=255) ggTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCCGCGta > 2:6646295/1‑72 (MQ=255) gTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGtat > 2:4740139/1‑72 (MQ=255) gTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGtat > 1:4101173/1‑72 (MQ=255) ttCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGtata > 2:7594713/1‑72 (MQ=255) tCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAg > 2:7243989/1‑72 (MQ=255) tCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCCTCGCATCAGGC‑AAGACCGTCTTAATTCGGCGTATAg > 2:574214/1‑72 (MQ=255) cTACCCCTGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGCACGTATTAATTCGGCGTATAGc > 2:3489829/1‑72 (MQ=21) tACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGcc > 1:7420990/1‑72 (MQ=255) ccccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCa > 1:5597974/1‑72 (MQ=255) ccccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCa > 1:4212029/1‑72 (MQ=255) ccccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATCAACTCGGCGTATAGCCCa > 2:5493398/1‑72 (MQ=255) ccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCAtt > 2:7137534/1‑72 (MQ=255) cTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTa > 2:5213900/1‑72 (MQ=255) cTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTa > 1:4510048/1‑72 (MQ=255) tGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTAc > 1:962921/1‑72 (MQ=255) ggTAGGCATTATAAGCCCCGCCGGGGCCGCGCCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCa < 2:5415326/71‑1 (MQ=255) cGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCa > 1:7093584/1‑72 (MQ=255) gTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGGGTATAGCCCATTAACaa > 2:2743960/1‑71 (MQ=255) gTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCAc > 2:6087259/1‑72 (MQ=255) gTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCAc > 1:6153348/1‑72 (MQ=255) tAGGCCTGATAAGACGGGCCCACGTCGGCTCACGC‑AAGACCGTATTAATTCGGCGTAAAGCCCACTACCAct > 2:2719110/1‑71 (MQ=25) ggCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGCATTAATTCGGCGTATAGCCCATTACCACGcc > 1:348915/1‑72 (MQ=255) ccTGANAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTACAGCCCATTACCACGCCAc > 1:725930/1‑72 (MQ=255) cTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACt > 1:5900706/1‑72 (MQ=255) tGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACtt > 2:2402239/1‑72 (MQ=255) caTAAGACGCGCCCGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTa > 2:4059978/2‑72 (MQ=255) aTAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTaa > 1:5639448/1‑72 (MQ=255) aTAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTaa > 2:2095669/1‑72 (MQ=255) aaGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGc > 1:1587737/1‑72 (MQ=255) aaGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGc > 1:7710605/1‑72 (MQ=255) aaGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGc > 2:5623213/1‑72 (MQ=255) aGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGcc > 1:4679917/1‑72 (MQ=255) gACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCa > 1:5440518/1‑72 (MQ=255) gACCCGCCAGCGCTGCCTCAGGC‑AAGACCGTATTAATTCGGCGTATACCCCCTTACTCCGCCCCTTCAGCCa > 2:6836792/1‑72 (MQ=255) cgcgCCAGCGTCGCATCAGGC‑AAGACCTTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGa > 1:1606572/1‑72 (MQ=255) cgcgCAAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGCATAGCCCATTACCACGCCACTTAAGCCAGa > 2:4030606/1‑72 (MQ=255) gcCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAg > 2:4208010/1‑72 (MQ=255) gcCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAg > 2:3624229/1‑72 (MQ=255) ccAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGt > 2:4151139/1‑72 (MQ=255) ccAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGt > 2:4094796/1‑72 (MQ=255) cAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGtt > 1:4909230/1‑72 (MQ=255) cAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGtt > 2:4461989/1‑72 (MQ=255) cAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGtt > 2:2910271/1‑72 (MQ=255) cAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCAATTACCACGCCACTTAAGCCAGAAAGtt > 2:3811379/1‑72 (MQ=255) aGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCNACTTAAGCCAGAAAGTTg > 1:2968264/1‑72 (MQ=255) gCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGc > 2:6815599/1‑72 (MQ=255) gCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGc > 1:7312382/1‑72 (MQ=255) cGTCGCATCAGGC‑AAGACCGTATTAATTCGGNGTATAGNCCATTACCACGCCACTTAAGCCAGAAAGTTGCt > 1:450732/1‑72 (MQ=255) cGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCCCGCCACTTAAGCCAGAAAAttcgt > 1:2747093/1‑69 (MQ=255) cGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCt > 1:6371801/1‑72 (MQ=255) cGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCt > 1:4054824/1‑72 (MQ=255) gTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCtt > 2:6051877/1‑72 (MQ=255) tCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTc > 1:5087681/1‑72 (MQ=255) tCGCATCAGCC‑ACGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCCCTTAAGCCAGAACGTTGCTTc > 1:1233775/1‑72 (MQ=255) cGCATCGGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCa < 1:6287739/72‑1 (MQ=255) gaaTCAGGC‑AAGACCNTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCaa > 2:741670/3‑72 (MQ=255) gCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCaa > 1:1104543/1‑72 (MQ=255) cATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGACAGTTGCTTCAAc > 1:2747411/1‑72 (MQ=255) aTCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACt > 2:6565586/1‑72 (MQ=255) tCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTc > 1:4281791/1‑72 (MQ=255) tCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTc > 2:6241919/1‑72 (MQ=255) ggcggC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTc < 2:7013351/69‑1 (MQ=255) cAGGCAAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTNAACTc < 1:731472/72‑1 (MQ=255) cAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCa > 1:6571560/1‑72 (MQ=255) cAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCAACTTAAGCCAGAAAGTTGCTTCAACTCa > 2:3678499/1‑72 (MQ=255) aGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCAc > 2:7250594/1‑72 (MQ=255) aGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCAc > 2:3417761/1‑72 (MQ=255) gC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCAccc > 2:5711958/1‑72 (MQ=255) gC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCAccc < 1:3573302/72‑1 (MQ=255) cc‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCTCTTAATCCATAAAGTTGCTTCAACTCAccc < 2:7411603/71‑1 (MQ=255) ac‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCAccc < 1:3683144/71‑1 (MQ=255) c‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCa < 2:4994831/72‑1 (MQ=255) aaGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAg < 1:1333286/72‑1 (MQ=255) aaGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAg > 2:6285929/1‑72 (MQ=255) aaGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAg > 2:3459511/1‑72 (MQ=255) aaGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAg < 2:1246816/72‑1 (MQ=255) | AAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑AAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGC > NC_012967/2374535‑2374677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |