| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 2066637 = | 158 (0.720) | 32 (0.180) +GTTGGCGCACAA |
12/118 | 10.3 | 19.6% | intergenic (‑34/+59) | wcaA/wzc | colanic acid biosynthesis glycosyltransferase WcaA/tyrosine‑protein kinase Wzc |
| ? | NC_012967 | = 4208344 | 158 (0.720) | intergenic (+51/+40) | yjbB/pepE | Na/Pi cotransporter family protein/dipeptidase PepE | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 158 total aligned reads displayed.
AAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCGGAACCG > NC_012967/4208274‑4208415 | agGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACt > 1:1714034/1‑72 (MQ=255) gacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTAt > 1:5869968/1‑72 (MQ=255) acgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCCGGCACTATg > 1:1007137/1‑72 (MQ=255) cgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑a > 1:5977620/1‑72 (MQ=255) cgggacgAGTATTAATATTGTGAATCCTGTAGGCCCGATAAAACGGGGCCAGCGT‑C‑GGATCAGGCACCATG‑a > 2:4892885/1‑72 (MQ=25) gggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑aa < 2:7363574/72‑1 (MQ=255) gggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑aa > 1:5642875/1‑72 (MQ=255) gggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑aa > 1:5458582/1‑72 (MQ=255) ggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑G‑GCATCAGGGACTATG‑AAc > 1:3651579/1‑72 (MQ=255) ggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AAc > 1:7281440/1‑72 (MQ=255) ggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AAc > 1:3833338/1‑72 (MQ=255) ggacgAGTATTAATATTGTGAATCCTGTAGGCCCGATAAAAAGCGCCAAACGG‑C‑GCATTAAGGACTATG‑aaa > 1:6597031/1‑71 (MQ=255) gacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAAACGCGTCAAGCGG‑C‑GCCTCAGGCACTATT‑AACa > 1:4090095/1‑72 (MQ=25) acgATTATTAATATTGTGAGTCCTGTAGGCGTAAAAAGACGCGTAAGGCGT‑C‑GCATCGGGCACTATG‑AACaa < 2:4334653/72‑1 (MQ=255) acgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACaa > 2:7446141/1‑72 (MQ=255) acgAGTATTAATATTGTGAATCCTGTAGGCCCCATAAAACGCGGCAAGCGT‑G‑GCATTCTGCACCATG‑AACaa > 1:1326953/1‑72 (MQ=19) cgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAg < 1:3623099/72‑1 (MQ=255) cgAGTATTAATATTGTGAATCCTGTAGGCCCCATAAAACGCGTCAAGAGG‑C‑GCCACACGCACCATGCaacaa > 1:3263395/1‑72 (MQ=255) gAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCCTCAGGCACTATG‑ACAAAGa > 2:1468911/1‑72 (MQ=21) gAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGa > 1:6177337/1‑72 (MQ=255) gAGTATTAATATTGTGAATCCTGTAGGCCCGCTAAAACGCGGCAAGCGG‑C‑GCATCCGGCACTCTG‑AACAAGa > 1:5278332/1‑72 (MQ=21) aaGTATTAATTTTGTAAATCCTTTGGGCTTAAAAAGCCGCGAAAGGCGC‑C‑GAATCGGGCACTATG‑AACAAGa < 1:4482373/71‑1 (MQ=255) aGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑t > 2:7636371/1‑72 (MQ=255) gTATTAGTATTGTGAGTCCTGTAGGCCTGATAAGACGCGTCAGGCGT‑C‑GCATCGGGCACTATG‑AACAAGA‑Tg < 2:3725410/72‑1 (MQ=21) gTATTAATATTGTGAATCCTGTAGGCCCGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGaag > 1:5888081/1‑70 (MQ=255) tATTAATATTGTGAATCCTGTAGGCCTGAAAAGACCCGGCAAGCGT‑C‑CCATCAGGTACTATG‑AACAAGA‑AGc > 1:6096099/1‑72 (MQ=25) ttAATATTGTGAATCCTGTAGGCCTGATAAGACGCGCAAAGCGT‑C‑GCATCGGGCACTATG‑AACAAGA‑TGCC‑g < 1:3077878/72‑1 (MQ=25) tAATTTTGTAAATCCTGGAGGCCTGAAAAAACGCCACAAGCGG‑CGGAATCGGGCACTATG‑AACAAGA‑TGCC‑g < 2:4964748/72‑1 (MQ=255) tAATATTGTGAATCCTGTAGGCCTGATAAGCCGCGTCAGGCGT‑C‑GCATCGGGCACTATG‑AACAAGA‑TGCC‑gg < 1:2067995/72‑1 (MQ=25) tAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑gg < 2:5182831/72‑1 (MQ=255) tAATATTGTGAATCCGGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑gg < 2:3832041/72‑1 (MQ=255) aaTATTGTGAATCCTGTAGGCCTGATAAGACGCGTCACGCGT‑C‑GCATCAGGGACTATG‑AACAAGA‑AGCC‑ggg > 1:1584204/1‑71 (MQ=21) atatTGTGAATCCTGTAGGCCTGATAGGACGCGTCAGGCGT‑C‑GCATCGGGCACTATG‑AACAAGA‑TGCC‑GGAt < 2:1566171/72‑1 (MQ=25) atatTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑gggt > 1:2286801/1‑70 (MQ=255) tatTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATc > 1:5195860/1‑72 (MQ=255) ttGTGAATCATTGAGCCGGGAAAAGACGGGACAAGCGT‑C‑GCATCAGCCACTATG‑AACAAGA‑TGCC‑GGATCAt < 1:3909364/72‑1 (MQ=16) gtgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGc > 1:7104895/1‑72 (MQ=255) tgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCa > 1:7511772/1‑72 (MQ=255) gAATCCTGTAGGCCCGATAAGACGCGTCAAGCGT‑C‑GCCTCAGGCACTATG‑AACAAGA‑TGCC‑GGATCAAGCAt > 1:4120619/1‑72 (MQ=25) acccTGGAGCCATGAAAAGACGCGCAAGGGGT‑G‑GCATCGGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATcc < 2:169680/70‑1 (MQ=255) tCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCg > 1:1482667/1‑72 (MQ=255) ccTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACCATG‑AACAAGA‑TGCC‑GGATCATGCATCCgg > 1:6105383/1‑72 (MQ=255) cTGTGGGCCTGAAAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGc < 1:7455810/72‑1 (MQ=255) cTGTAGCCTTAATAAGCGGCGTAAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGc < 2:6265901/72‑1 (MQ=25) tGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCa > 1:7348582/1‑72 (MQ=255) gTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCaa > 1:1980548/1‑72 (MQ=255) aGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGGACATGCATCCGGCCAtt > 1:2550554/1‑72 (MQ=21) aGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCTGCAAtt > 1:4004970/1‑72 (MQ=255) ggCCTGATAAGACTCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTc < 2:2289223/72‑1 (MQ=255) ggCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGGTCATGCCTCCGGCCAttt > 2:5843479/1‑71 (MQ=21) ggCCTGAAAAGGCGCGGAAAGCGTCC‑CCATCGGCCACTAGG‑AAAAAGA‑TGCC‑GGATCATCCACCCGGCAAtt < 2:6344325/72‑1 (MQ=255) tGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑tt > 1:7588983/1‑72 (MQ=255) tGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑tt > 2:4133008/1‑72 (MQ=255) gATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTa > 1:6245322/1‑72 (MQ=255) gATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑A‑TTa > 2:7204190/1‑72 (MQ=255) aTAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGGC‑GGATCATGCACCCGGCAATTCA‑C‑TTaa > 2:4375856/1‑72 (MQ=255) aTAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTaa > 1:4723706/1‑72 (MQ=255) aTAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TACC‑GGATCAAGCATCGGGCACTTCC‑C‑GTaa > 2:3291133/1‑72 (MQ=21) aaGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTaaaa > 2:7396232/1‑72 (MQ=255) aGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGGC‑GGGGCCTGTCACCGGCAATACAGC‑TTaaaa > 2:5073502/1‑72 (MQ=12) aGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TCGC‑GGATCATAAATCCCGCAATCTA‑C‑TTaaaaa > 2:6925752/1‑72 (MQ=21) gACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTaaaaaa > 1:4425129/1‑71 (MQ=255) aCGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACg > 1:1961122/1‑72 (MQ=255) cgcgTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGATTCCC‑GGACAAGCCACCCGGC‑ATTCA‑C‑CTAAAAAAgg > 2:1419219/1‑72 (MQ=12) cgcgTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACgg > 1:7162689/1‑72 (MQ=255) cgcgTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCAACCGGCCATTTA‑CTTTAAAAACg > 2:2317978/1‑72 (MQ=25) gcgTCAAGCGT‑C‑GCATCACGCACTATG‑AACAAGA‑TGCC‑GGATCATTCCTCCGGCAATTTA‑C‑TTAAAAACGGt > 2:4166542/1‑72 (MQ=38) gcgTCAAGCGT‑A‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGt < 1:99793/72‑1 (MQ=255) cgTCATGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GCGGCCAGCATCCAGCACCTCG‑C‑TTCAAAACgcgg > 2:1204720/1‑69 (MQ=12) cgTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTg > 1:1001575/1‑72 (MQ=255) cgTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTg > 1:7603754/1‑72 (MQ=255) cgTAAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTg < 1:2336807/72‑1 (MQ=255) gTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATGATGCAACCGGCAATTCA‑C‑TTAAAAACGGTGa > 1:257530/1‑72 (MQ=255) gTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑CGATCATGCATCCGGCCATTCA‑C‑CTAAAAACGGTGa > 2:4291676/1‑72 (MQ=38) tCAAGCGT‑C‑GCATCAGGCACTATG‑AACAANA‑TGCC‑GGGTCATGCATCCGGGAATTTA‑C‑TTTAAAACAGGGAc > 2:664578/1‑72 (MQ=25) cAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGAcc > 1:3318065/1‑72 (MQ=255) aaGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCa > 2:6449101/1‑72 (MQ=255) aaGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCa > 1:2701704/1‑72 (MQ=255) aGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑CGACACTCCATCCGGCAATGCA‑A‑TTCAAAACCGTGAACAg > 2:3222135/1‑72 (MQ=19) gT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCtt > 2:3488736/1‑72 (MQ=255) cgac‑GCACCAGCCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCt < 2:7497925/69‑1 (MQ=255) c‑GCATCAGGCACTATG‑AACAAGA‑TGCCGGGATC‑TGCAACCCGGCATTCA‑C‑TTAAAAACGGGGACCAGCtttc > 2:2989138/1‑70 (MQ=255) c‑GCATCAGGAACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTcc < 2:5713872/72‑1 (MQ=255) cATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCTGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAg > 2:5991582/1‑72 (MQ=255) cATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGAACAGCCTCCAg > 2:2086193/1‑72 (MQ=255) tCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCg > 1:6975015/1‑72 (MQ=255) tCAGGAACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCg < 2:1579265/72‑1 (MQ=255) cAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCgg > 1:1794583/1‑72 (MQ=255) cAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCgg > 1:4395557/1‑72 (MQ=255) cAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCgg > 2:6724522/1‑72 (MQ=255) cAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAACTTCCCGCgg > 2:206008/1‑72 (MQ=255) aGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCGGa > 1:6545695/1‑72 (MQ=255) aGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCGGa > 2:6058911/1‑72 (MQ=255) gCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCGGAAc > 1:638254/1‑72 (MQ=255) cACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCGGAAcc > 1:1839432/1‑72 (MQ=255) aaCTATA‑AACAGGA‑CGCC‑GGATCATCCACCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCGGAAcc < 2:1149435/71‑1 (MQ=255) aCTATG‑AACAGGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCGGAACCg < 1:2246792/72‑1 (MQ=255) aCTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCGGAACCg < 1:4343400/72‑1 (MQ=255) aCTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCGGAACCg > 2:4553000/1‑72 (MQ=255) aCTATG‑AACAAGA‑TGCC‑GGACCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCTGAACCg > 1:3167301/1‑72 (MQ=255) | AAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGT‑C‑GCATCAGGCACTATG‑AACAAGA‑TGCC‑GGATCATGCATCCGGCAATTCA‑C‑TTAAAAACGGTGACCAGCTTCCAGCGGAACCG > NC_012967/4208274‑4208415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |