| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 3482676 = | 94 (0.430) | 76 (0.380) | 51/130 | 3.2 | 53.0% | coding (992/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
| ? | NC_012967 | = 3482700 | 49 (0.240) | coding (1016/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATTCATC > NC_012967/3482629‑3482771 | cGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGa > 1:4404917/1‑72 (MQ=255) gAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAg < 1:4542000/72‑1 (MQ=255) gAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAg > 2:6209328/1‑72 (MQ=255) gAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCGGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAg < 2:6549050/72‑1 (MQ=255) cgTGGTTCTGCTACCCCCCGCTGTTTGTTACCTTCCGGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGc < 1:3928369/71‑1 (MQ=255) gTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCt < 2:2514625/72‑1 (MQ=255) tgcttCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGNGCTGCCAGTGGGAACTGGCGGCGGAGCTg < 2:649984/69‑1 (MQ=255) tGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCGGTGGGAACTGGCGGTGGAGCTg < 1:6836700/72‑1 (MQ=255) tGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGCGCTg > 2:5757578/1‑72 (MQ=255) tGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTg > 1:7200822/1‑72 (MQ=255) tGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTg > 1:2434149/1‑72 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGGGGAGCCGc > 2:7433111/1‑72 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTgt > 1:5351050/1‑71 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGc > 2:1795556/1‑72 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGc < 1:3469796/72‑1 (MQ=255) ggTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGc < 1:3435852/72‑1 (MQ=255) ttCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGTCAGCGCTGCCAGTGGGAACTGGCGGGGGAGATGcga > 2:2050310/1‑70 (MQ=255) ttCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcca < 1:6690197/72‑2 (MQ=255) ttCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcca > 1:7522309/1‑71 (MQ=255) ttCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGcca > 1:5237199/1‑71 (MQ=255) tCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCTgg > 1:5950194/1‑72 (MQ=255) ctgctgTCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGccagt < 1:345290/72‑4 (MQ=255) cTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGccagt > 2:1675169/1‑69 (MQ=255) gCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGCACCGGCGGCCGGGCTGCCgggcg > 2:7050745/1‑69 (MQ=255) ggagcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGccc > 1:3862002/4‑72 (MQ=255) gagcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCCCCGTGCCGCCGCCGAAAGCTGGGTGGCCCa > 1:6528963/3‑72 (MQ=255) aagcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCa < 2:7288842/70‑1 (MQ=255) agcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGACATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAg > 1:6161022/2‑72 (MQ=255) agcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAg < 1:2048808/71‑1 (MQ=255) gcTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAgg > 1:6610724/1‑72 (MQ=255) cggCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAggg < 1:7077430/70‑1 (MQ=255) cggCCAGTGGGAACGGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAggg < 1:1652872/70‑1 (MQ=255) cTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAACTGGGTGGGCCAggg > 2:2366291/1‑72 (MQ=255) tGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGAAGGCGCAGGGa > 1:1907848/1‑72 (MQ=255) gCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGNAGAAAGCTGGATGGCCCAGGGAt < 1:4944236/72‑1 (MQ=255) aGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCCGGATGGCCCAGGGAgttg > 2:3435341/1‑71 (MQ=255) tcgggAGCGGGCGGAGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTcc < 1:3762008/70‑1 (MQ=255) tGGGTACTGGCAGCGGAGCTGCGGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTccc < 1:5821392/72‑1 (MQ=255) gggAACTGGCGGCGGAGCTGCCGGAAATCCACCCTGCCGCCCCAGAAAGCTGGACGGCCCACGGACTccccc > 2:2046946/1‑71 (MQ=255) ggAGCTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcag < 1:3644986/72‑1 (MQ=255) ggAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcag < 1:5639234/72‑1 (MQ=255) gAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCCGAAAGCTGGATGGCCCCGGGGCTTGCcagc > 1:1818923/1‑72 (MQ=255) gAACGGGCGGCGGAGCTGCCGCAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagc < 2:6985345/72‑1 (MQ=255) accTGGCGGGGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcg < 1:3593585/70‑1 (MQ=255) aaCTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCCGGGATTTCCccgcg > 1:2269312/1‑72 (MQ=255) cgcggcggcGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgc < 1:2798558/69‑1 (MQ=255) aCTGGCGGCGGAGCTGCCCGAAAACCACCCTGCCGCCCCCGAAAACAGGGTGGGCCACGGCGCTCCcagcgc > 2:2321049/1‑72 (MQ=255) cTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCGcagcggc > 1:3240894/1‑70 (MQ=255) cTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcc > 2:6638947/1‑71 (MQ=255) cTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgca < 2:5137415/72‑1 (MQ=255) tGGCGGCGGAGCTGCCGGAAATCCACCGTNCCGCCGCAGAAAGCTGGAAGGCCCAGGGGGTTCCaagcgccg > 2:373016/1‑70 (MQ=255) tGGCGGAGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcag > 2:6845918/1‑72 (MQ=255) gggcggcGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcag < 1:1324969/71‑1 (MQ=255) gggcggcGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcag < 2:3063503/71‑1 (MQ=255) ggcggcGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcagc < 1:1469375/72‑1 (MQ=255) ggcggcGGAGCTGCCGGAAATCCACCGTGCCGCCCCCGAAAGCCGGGTGGCCCAGGCATTTCCccgcgccgc > 1:1585498/1‑72 (MQ=255) gcaggcggAGCGACCGAAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcagc < 2:6461296/69‑1 (MQ=255) gcggcgGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcagcg < 1:1385985/72‑1 (MQ=255) gcggcgGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCcagcgcagcg < 1:5511948/72‑1 (MQ=255) cggcggAGCTGCCGGAAATCCACCGTGCCGCCGCCGAACGCTGGATGGCCCCGGGGTTTCCccgcgcagcgg > 2:4862021/1‑71 (MQ=255) cggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGGCCCGGGGCTTCCCCGCGCAGCGa > 2:4928450/1‑72 (MQ=255) cggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGa > 1:1569429/1‑72 (MQ=255) ggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGAt < 1:1272673/72‑1 (MQ=255) ggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGAt < 1:14372/72‑1 (MQ=255) cggAGCTGCCGGAGTGCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCCCAGCGATtc < 1:332180/72‑1 (MQ=255) cggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGCTTTCCCCGCGCGTCGATtc > 2:6989443/1‑72 (MQ=255) cggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtc < 1:5627158/72‑1 (MQ=255) cggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtc < 1:3545725/72‑1 (MQ=255) cggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTACCCAGCGCAGCGATtc < 1:397193/72‑1 (MQ=255) ggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtca > 1:3498367/1‑72 (MQ=255) ggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtca > 2:7199500/1‑72 (MQ=255) gcaGCGGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtca < 2:2493303/70‑1 (MQ=255) gAGCTGCCGGAAATCCACCGTGCCGCCGTAGAAAACTGGATGGCCCAGGGATTTGGCATGGCAGAGATtaat > 1:7598753/1‑72 (MQ=255) gAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCGGCGATccac > 1:5777599/1‑71 (MQ=255) gAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATtcat < 2:4952930/72‑1 (MQ=255) aGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCCGGATGGCCCAGGGACTTCCCACCGGCGCGACtcacg > 2:1909068/1‑70 (MQ=255) | CGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATTCATC > NC_012967/3482629‑3482771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |