| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_012967 | 3,482,567 | C→T | Q295* (CAA→TAA) | malT → | HTH‑type transcriptional regulator MalT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 3,482,567 | 0 | C | T | 99.5% | 619.6 / ‑4.8 | 188 | Q295* (CAA→TAA) | malT | HTH‑type transcriptional regulator MalT |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (89/98); minor base G (1/0); total (90/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
Only 100 of 194 total aligned reads displayed.
TTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGG > NC_012967/3482498‑3482635 | ttGAANAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTaa > 2:404825/1‑72 (MQ=255)ttGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTaa > 2:1242628/1‑72 (MQ=255)ttGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTaa > 1:4632338/1‑72 (MQ=255)ttGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTaa > 1:4606481/1‑72 (MQ=255) gAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAAt > 1:5799098/1‑72 (MQ=255) aaaGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgc < 1:1183581/72‑1 (MQ=255) aaaGCGCCATTTTGCGCTCAATGAAAGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgc > 2:3696014/1‑72 (MQ=255) aaaGCGCCATTTGTCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgc < 2:2657589/72‑1 (MQ=255) aGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgcgc < 1:7126652/72‑1 (MQ=255) aGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgcgc > 2:3622339/1‑72 (MQ=255) aGCCCCATTCTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgcgc < 1:2820249/72‑1 (MQ=255) cgcCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCt < 2:7340949/72‑1 (MQ=255) cgcCATTCTGCGCTGAATGACCGATGCCGTCCTCCACTGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCt < 2:5982175/72‑1 (MQ=255) gcCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTc > 1:4524503/1‑72 (MQ=255) gcCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTc < 1:1631289/72‑1 (MQ=255) gcCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTc < 2:1460148/72‑1 (MQ=255) gcCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTc < 1:3779493/72‑1 (MQ=255) ccATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCg < 1:1915685/72‑1 (MQ=255) ccATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCg < 2:2541263/72‑1 (MQ=255) ccATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCCCCTCg > 2:6028419/1‑72 (MQ=255) cATTTTGCGCTCAATGANCGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGa > 1:658357/1‑72 (MQ=255) cATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGa < 2:6042777/72‑1 (MQ=255) aTTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGaa < 2:6081200/72‑1 (MQ=255) aTTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGGAAATGCGCCTCGaa > 2:5678382/1‑72 (MQ=255) ttttGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAag < 2:3513088/72‑1 (MQ=255) tttGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAaga > 1:1813558/1‑72 (MQ=255) tttGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAaga < 2:441604/72‑1 (MQ=255) ttGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAagag < 2:3770982/72‑1 (MQ=255) tGCGCTCAATGAACGCTGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAgaga > 1:1733747/1‑72 (MQ=255) tGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAgaga > 2:5131669/1‑72 (MQ=255) ngcgcTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAgaga < 1:863672/71‑1 (MQ=255) cgcTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGAtt < 2:7378963/72‑1 (MQ=255) cgcTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGAtt > 1:6957101/1‑72 (MQ=255) gcTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTg > 2:1019636/1‑72 (MQ=255) cTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAANGGGTAAATGCGCCTCGAAGGNGTTGa > 2:840308/1‑72 (MQ=255) cTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGa > 1:4840341/1‑72 (MQ=255) cTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGa < 1:383220/72‑1 (MQ=255) cTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGa > 1:5288946/1‑72 (MQ=255) cAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGc > 1:6874335/1‑72 (MQ=255) cAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGc > 1:7034333/1‑72 (MQ=255) cAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGc < 2:4123196/72‑1 (MQ=255) tGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTc < 1:6389526/72‑1 (MQ=255) tGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTc < 1:6049261/72‑1 (MQ=255) gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGCGCGTCa > 2:4005558/1‑72 (MQ=255) gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCa < 1:6740639/72‑1 (MQ=255) gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCa > 2:6377200/1‑72 (MQ=255) gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCa < 1:3715391/72‑1 (MQ=255) gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCa < 1:7520833/72‑1 (MQ=255) gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCa < 2:4312042/72‑1 (MQ=255) aaCGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAg > 2:3137714/1‑72 (MQ=255) cGATGCACTCATCACACGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAggg > 2:4487073/1‑72 (MQ=255) gATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAgggg < 2:675572/72‑1 (MQ=255) aTGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGc < 2:488647/72‑1 (MQ=255) gCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTGAGGGGcgg > 1:4143370/1‑70 (MQ=255) gCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTg > 1:5233445/1‑72 (MQ=255) gCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGCCTg > 2:3203191/1‑72 (MQ=255) aCTTATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGtt > 2:5526549/1‑72 (MQ=255) aCTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGtt > 1:7409265/1‑72 (MQ=255) cTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGttt > 2:1710285/1‑72 (MQ=255) cTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGttt < 1:4414861/72‑1 (MQ=255) tcatcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGtttt > 2:5836433/1‑72 (MQ=255) catcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGtgttt > 2:1756891/1‑72 (MQ=255) atcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGtttttt > 2:2292592/1‑71 (MQ=255) atcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTa > 2:6671111/1‑72 (MQ=255) atcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTa < 1:6483566/72‑1 (MQ=255) atcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTa > 2:2818891/1‑72 (MQ=255) caCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACa > 1:6924984/1‑72 (MQ=255) ccGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCg < 1:7234582/72‑1 (MQ=255) ccGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCg < 1:6671112/72‑1 (MQ=255) cGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTTCAGCgg > 2:3324285/1‑72 (MQ=255) cGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCgg < 1:3968300/72‑1 (MQ=255) gtgtGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCgga < 2:7069161/72‑1 (MQ=255) tgtgACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggat < 2:6624296/72‑1 (MQ=255) tgtgACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggat < 1:4179629/72‑1 (MQ=255) tgtgACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGCCAGGGGCTGTTTTTACAGCggat > 1:2069544/1‑72 (MQ=255) gtgACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatg < 1:1973408/72‑1 (MQ=255) tgACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatgg < 2:5276390/72‑1 (MQ=255) gACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatgga < 1:1165567/72‑1 (MQ=255) gACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatgga < 1:7335409/72‑1 (MQ=255) gACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTAAAGGgggtggg > 2:177868/1‑71 (MQ=255) aCCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatgggt > 2:5429818/1‑70 (MQ=255) aCCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatggat < 2:1648806/72‑1 (MQ=255) cGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGgatga < 2:6553874/72‑1 (MQ=255) cGGCGAAGAAAACGGGTAAANGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGgatga < 1:2850560/72‑1 (MQ=255) gCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGATa > 2:471921/1‑72 (MQ=255) gCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATa > 1:5868700/1‑72 (MQ=255) cGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATAc > 1:4747948/1‑72 (MQ=255) gaagaaAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATAcc > 1:6304297/1‑72 (MQ=255) gaagaaAACGGGTAAATCCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGGTGGGAGATaac > 1:6906547/1‑70 (MQ=255) aagaaAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGATAACg > 1:4668635/1‑72 (MQ=255) gaaAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGc < 1:2622795/72‑1 (MQ=255) gaaAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGc < 2:2726294/72‑1 (MQ=255) aaaaCGGGTAAATGCGCCTGGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCg < 2:1538577/72‑1 (MQ=255) aaaaCGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGATACCGGCg > 1:6098044/1‑72 (MQ=255) aaaaCGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGAAAACgggg > 2:108307/1‑70 (MQ=255) aaaCGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGa < 1:4120366/72‑1 (MQ=255) aaaCGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGa < 2:201139/72‑1 (MQ=255) aaCGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACATCGGATGGGTGATACCGGCGAg > 2:451450/1‑72 (MQ=255) cGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTg > 1:2785606/1‑72 (MQ=255) gggTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTgg < 1:5505740/72‑1 (MQ=255) | TTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGG > NC_012967/3482498‑3482635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |