| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 183432 = | 243 (0.850) | 27 (0.100) | 7/138 | 17.8 | 10.3% | coding (1354/1518 nt) | dgt | dGTPase |
| ? | NC_012967 | = 241673 | NA (NA) | coding (113/449 nt) | ECB_RS01120 | IS1‑like element IS1A family transposase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 247 total aligned reads displayed.
TGGTAGAAAAAGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATGGGAATATTAT > NC_012967/183361‑183503 | tGGTAGAAAAAGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATc > 2:1589250/1‑72 (MQ=255)tGGTAGAAAAAGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATc > 1:7062181/1‑72 (MQ=255)tGGTAGAAAAAGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATc > 2:9247196/1‑72 (MQ=255) tAGAAAAAGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGc > 2:7859030/1‑72 (MQ=255) tAGAAAAAGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGc < 1:5209299/72‑1 (MQ=255) tAGAAAAAGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAAATATCGACGGGCCATccgt > 2:8562367/1‑69 (MQ=255) aGAAAAAGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCt > 1:2195068/1‑72 (MQ=255) gAAAAAGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTg < 2:1479105/72‑1 (MQ=255) aaaaaGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTgg < 2:4069538/72‑1 (MQ=255) aaaaaGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTgg > 1:9614798/1‑72 (MQ=255) aaaGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTgggc > 1:3582407/1‑70 (MQ=255) aGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTa < 2:6536526/72‑1 (MQ=255) gagcGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTAt < 1:3363646/69‑1 (MQ=255) gAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTAt < 2:2912779/72‑1 (MQ=255) aaCGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATg > 1:4897986/1‑72 (MQ=255) aCGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGt > 2:7982308/1‑72 (MQ=255) aCGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGt < 2:5021067/72‑1 (MQ=255) aCGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGt < 2:2669876/72‑1 (MQ=255) cGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTc < 2:4783678/72‑1 (MQ=255) cGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTc > 1:9113613/1‑72 (MQ=255) cGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTc > 1:5280390/1‑72 (MQ=255) cGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTc > 1:8174317/1‑72 (MQ=255) cGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTc < 2:5358827/72‑1 (MQ=255) cGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTc < 1:7459433/72‑1 (MQ=255) cGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTATCGACGCGCCATCGGCTGGCCTATGtg > 2:8733891/1‑71 (MQ=255) gggTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTGTGTCg > 2:8797352/1‑72 (MQ=255) gggTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCg < 2:4260663/72‑1 (MQ=255) gggTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCg > 2:3492638/1‑72 (MQ=255) gggTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCg > 2:9663163/1‑72 (MQ=255) ggTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGa > 1:2607785/1‑72 (MQ=255) gTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAg > 2:7245100/1‑72 (MQ=255) gTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCCAAGTCggg > 2:756862/1‑70 (MQ=255) tGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAgg > 2:2932338/1‑72 (MQ=255) aaCGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTCTGTCGAGGCTg > 1:2409797/1‑72 (MQ=255) aCGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGt < 2:2102928/72‑1 (MQ=255) aCGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGt > 2:6372716/1‑72 (MQ=255) cGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTggt > 1:841517/1‑70 (MQ=255) cGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTc < 1:3848379/72‑1 (MQ=255) cGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTc > 1:8686621/1‑72 (MQ=255) gTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCa < 2:9768182/72‑1 (MQ=255) gTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCa < 1:4038759/72‑1 (MQ=255) tttCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAg > 1:550799/1‑72 (MQ=255) tCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGtc > 1:6942705/1‑71 (MQ=255) tCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTa < 2:8921770/72‑1 (MQ=255) cccTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTaa < 1:3539469/72‑1 (MQ=255) cccTATTGAATCGCGCTTATTCAACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTaa < 1:4123978/72‑1 (MQ=255) tATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAAtt < 2:2740566/72‑1 (MQ=255) tATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAAtt < 1:1352541/72‑1 (MQ=255) tATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAAtt > 1:8986835/1‑72 (MQ=255) tGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTAcc < 1:3324861/72‑1 (MQ=255) aaTCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGt > 1:8462924/1‑72 (MQ=255) tCGCGCTTATTCCACAGACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCa < 1:5760245/72‑1 (MQ=255) tCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGGCGGTAGTAACATACCGTcc > 2:7138547/1‑71 (MQ=255) cgcgCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAg < 1:2813081/72‑1 (MQ=255) gcgcTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTTAGa < 1:5789536/72‑1 (MQ=255) gcgcTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGa > 1:2679168/1‑72 (MQ=255) cgcTTATTACACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGAt < 2:7442970/72‑1 (MQ=255) gcTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGAtt > 2:4840176/1‑72 (MQ=255) cTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATtc < 1:4207847/72‑1 (MQ=255) cTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATtc > 2:1848235/1‑72 (MQ=255) tATTCCACAAAGTCTCGACGCGCCATCGGCTGGCCTATGTCGAGNCTGTCAGTAAATTACCGTCAGATtcnc > 1:976310/1‑72 (MQ=255) tATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCCGATtctc > 1:1775391/1‑72 (MQ=255) tATTCCACAAACTCTAGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATtctc < 1:6456784/72‑1 (MQ=255) aTTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGCTTCTcc < 2:3847862/72‑1 (MQ=255) aTTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTcc < 2:3176335/72‑1 (MQ=255) aTTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTATcc > 2:6955776/1‑72 (MQ=255) aTTCCACAAACTCGCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTcc < 1:1016706/72‑1 (MQ=255) aTTCCACAAACGCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTcc < 1:9562224/72‑1 (MQ=255) aTTCCAAAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTcc < 2:4037577/72‑1 (MQ=255) tCCACAAACTCTCGACGCGCCATCGGCTGGGCCATGTCGAGGCTGCCGGTCAAGTTACGTCAGAATCTcccg > 2:9194180/1‑70 (MQ=255) ccACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGa > 1:2996049/1‑72 (MQ=255) cacaAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAg < 1:8087699/72‑1 (MQ=255) acaAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTAACGTCAGATTCTCCTGAGt > 2:6486133/1‑72 (MQ=255) aaaCTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGttt < 2:2382941/72‑1 (MQ=255) aaaCTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGttt < 2:7875312/72‑1 (MQ=255) aaaCTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGttt > 2:6631837/1‑72 (MQ=255) agctctCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTc < 1:4526157/70‑1 (MQ=255) aCTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTNCCGTCAGATTCTCCTGAGTTTcc < 1:6353158/72‑1 (MQ=255) aCTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTcc < 2:9020163/72‑1 (MQ=255) ctctCGACGCGCCATCGGCTGGGCCATTTCGAGGCTGTCCGTAAAATAACGTCCGATTTTCCTTAGTTTCCg > 2:1295480/1‑72 (MQ=255) ctctCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCg < 1:2907913/72‑1 (MQ=255) tctcGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGc > 1:3931626/1‑72 (MQ=255) ctcGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCt < 2:8276230/72‑1 (MQ=255) cccGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCt < 2:1238688/70‑1 (MQ=255) cGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTAt < 1:8664718/72‑1 (MQ=255) cGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTAt < 1:2142686/72‑1 (MQ=255) cGACGCGCCAGCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTAt < 1:144798/72‑1 (MQ=255) cgcgCCATCGGCTTGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATggg > 1:1167726/1‑72 (MQ=255) cgcgCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATggg < 2:2460514/72‑1 (MQ=255) cgcgCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATggg < 1:7191441/72‑1 (MQ=255) cgcgCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGGCAGATTCTCCTGAGTTTCCGCTATggg < 2:8421716/72‑1 (MQ=255) gcgcCATCGGCTGGCCTATGTCGAGGGTGTCAGTAAATTACCGTCAAATTCTCCTGAGGTTCCCCTATgggg > 2:7742125/1‑71 (MQ=255) gcgcCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATGGGa < 2:6922082/72‑1 (MQ=255) cgcCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATGGGaa > 1:7987164/1‑72 (MQ=255) ccATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATGGGAata > 1:608905/1‑72 (MQ=255) cATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATGGGAatat < 1:9829747/72‑1 (MQ=255) aTCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATGGGAAtatt > 1:5340509/1‑72 (MQ=255) tCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATGGGAAgatta < 2:4535085/72‑1 (MQ=255) tCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCNCCTGAGTTTCCGCTATGGGAAtatta > 2:1055036/1‑72 (MQ=255) cGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATGGGAAtattat < 1:6054578/72‑1 (MQ=255) | TGGTAGAAAAAGAACGGGTGAAACGTTTCCCTATTGAATCGCGCTTATTCCACAAACTCTCGACGCGCCATCGGCTGGCCTATGTCGAGGCTGTCAGTAAATTACCGTCAGATTCTCCTGAGTTTCCGCTATGGGAATATTAT > NC_012967/183361‑183503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |