| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 543331 | 65 (0.230) | 7 (0.030) | 7/126 | 17.1 | 15.5% | coding (549/552 nt) | ybcL | Raf kinase inhibitor‑like protein YbcL |
| ? | NC_012967 | = 543565 | 19 (0.070) | coding (222/798 nt) | ybcM | helix‑turn‑helix transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGTTAGTTGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCGAAGAAATACGGATGCATAAACATCA > NC_012967/543261‑543402 | cGTTAGTTGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGt < 1:1469927/72‑1 (MQ=255)cGTTAGTTGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGt < 2:7778787/72‑1 (MQ=255) gTTAGTTGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTa > 2:9501891/1‑72 (MQ=255) tAGTTGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAgg < 2:5174571/72‑1 (MQ=255) tAGTTGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAgg < 2:8871388/72‑1 (MQ=255) aGTTGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAggg < 2:8477095/72‑1 (MQ=255) gTTGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGt < 1:8509907/72‑1 (MQ=255) gTTGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGt < 2:5534175/72‑1 (MQ=255) gTTGGTTATATGCTTAANGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGt > 1:883643/1‑72 (MQ=255) ttGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTg < 1:5360602/72‑1 (MQ=255) tgggTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTg < 2:418910/70‑1 (MQ=255) tGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTga < 2:6244307/72‑1 (MQ=255) ttATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGagag < 1:1289251/72‑1 (MQ=255) tataTGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGt > 1:3849452/1‑72 (MQ=255) tataTGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGt > 1:3880591/1‑72 (MQ=255) atatGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTa > 2:7615417/1‑72 (MQ=255) atatGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTa > 1:4189158/1‑72 (MQ=255) atatGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTa < 1:4862476/72‑1 (MQ=255) tatGCTTAATGCTAATGAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTAt < 2:371993/72‑1 (MQ=255) atGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATg < 2:6239806/72‑1 (MQ=255) cTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTg < 2:5879751/72‑1 (MQ=255) tAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGc < 1:5179535/72‑1 (MQ=255) aaTGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCa < 1:8105606/72‑1 (MQ=255) aTGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCaa < 1:9719155/72‑1 (MQ=255) aTGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCaa < 1:1654399/72‑1 (MQ=255) tGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAag < 2:9520342/72‑1 (MQ=255) tGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAag < 2:4134519/72‑1 (MQ=255) gCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAaga > 2:1932790/1‑72 (MQ=255) acTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAaga < 2:6011072/71‑1 (MQ=255) cTAATAAAATCGCAACCGCTGAGATANCACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAagag < 2:1056881/72‑1 (MQ=255) cTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAagag < 1:2624830/72‑1 (MQ=255) cTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAagag < 2:4986559/72‑1 (MQ=255) ataaAAGCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTa < 1:2086537/72‑1 (MQ=255) taaAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTaa < 1:6981827/72‑1 (MQ=255) taaAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTaa < 2:9825662/72‑1 (MQ=255) aaaaaNCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTaa < 2:876226/71‑1 (MQ=255) aaaTCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGa < 1:1449071/72‑1 (MQ=255) aaaTCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGa < 1:1947862/72‑1 (MQ=255) aaTCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGAc > 1:7677149/1‑72 (MQ=255) aaTCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGAc > 2:5868151/1‑72 (MQ=255) aaTCCCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGAc < 2:5633213/72‑1 (MQ=255) ctCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACt < 2:3481978/71‑1 (MQ=255) aTCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACt < 2:9064495/72‑1 (MQ=255) aTCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACt < 1:8187501/72‑1 (MQ=255) tCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTa < 2:8996319/72‑1 (MQ=255) cGCAACCGCTGAGATAACNCCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTaa < 1:3819314/72‑1 (MQ=255) cAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACt < 1:3575758/72‑1 (MQ=255) aaCCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACtt < 1:3337066/72‑1 (MQ=255) aaCCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACtt < 1:6190851/72‑1 (MQ=255) aaCCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACtt < 2:154178/72‑1 (MQ=255) tGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCANGAGGTAAGACTAACTTAAAGAt > 1:4357629/1‑72 (MQ=255) tGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGAt > 1:6820734/1‑72 (MQ=255) tGAGATAACACCAGTTTATAGGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGAt < 1:4024857/72‑1 (MQ=255) aTAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCgaa < 2:1386513/72‑1 (MQ=255) ncacCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCgaagaa > 1:5394969/2‑72 (MQ=255) cacCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCCAGAGGTAAGACTAACTTAAAGATCGAAGaaa > 1:328938/1‑72 (MQ=255) acCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCGAAGAAAt > 1:8953937/1‑72 (MQ=255) ccAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCGAAGAAATa > 1:2818626/1‑72 (MQ=255) ccAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCGAAGAAATa > 1:1744088/1‑72 (MQ=255) aTGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCGAAGAAATACGGATGc > 1:4603867/1‑72 (MQ=255) aTGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCGAAGAAATACGGATGc > 1:3363370/1‑72 (MQ=255) aTGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCGAAGAAATACGGATGc < 2:4677182/72‑1 (MQ=255) tGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCGAAGAAATACGGATGCa < 2:3521969/72‑1 (MQ=255) aaGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCGAAGAAATACGGATGCATAAAcat < 2:9797674/72‑1 (MQ=255) gTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCGAAGAAATACGGATGCATAAAcatca < 2:8189502/72‑1 (MQ=255) | CGTTAGTTGGTTATATGCTTAATGCTAATAAAATCGCAACCGCTGAGATAACACCAGTTTATGAGATAAAGTAGGGTGAGAGTATGCTGGCAAGAGGTAAGACTAACTTAAAGATCGAAGAAATACGGATGCATAAACATCA > NC_012967/543261‑543402 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |