| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 1,341,922 | 1 | . | G | 21.1% | 101.9 / 30.1 | 38 | intergenic (‑223/+46) | osmB/yciT | osmotically‑inducible lipoprotein OsmB/DNA‑binding transcriptional regulator YciT |
| Reads supporting (aligned to +/- strand): ref base . (18/12); new base G (8/0); total (26/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.85e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.99e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCAACGACGTGAACGGTGA > NC_012967/1341852‑1341993 | taatTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑g > 1:9620286/1‑72 (MQ=255)taatTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATATTAGAGC‑g < 1:1880426/72‑1 (MQ=255) tataTCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑Ggatga‑t > 2:7153373/1‑72 (MQ=255) cTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGTTGA‑TTTGcc < 1:238874/72‑1 (MQ=255) cTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGGAGA‑ttttgc > 2:2826884/1‑69 (MQ=255) ttGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGATGA‑TTTGCCa < 1:2787723/72‑1 (MQ=255) gagTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAACt < 1:9812850/72‑1 (MQ=255) gagTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAACt > 2:7779868/1‑72 (MQ=255) taataaCAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAACTGCAAat < 1:8989328/72‑1 (MQ=255) taataaCAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAACTGCAAat < 2:3005734/72‑1 (MQ=255) ataaCAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGGAGGA‑TTTTCCAAATGGCaaaca > 1:5249824/1‑70 (MQ=255) ataaCAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAACTGCAAatca < 1:7109209/72‑1 (MQ=255) aaTAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGAAGG‑TTTGCCAAACTGCAAATCATCCGTA‑ggg‑a > 1:6584582/1‑72 (MQ=255) tAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGGAGGA‑TTTGCCAAAATCTCAAACATCCGCA‑GGG‑aa > 2:5116524/1‑72 (MQ=255) actCTTAATTATCAACCAGGAATCATCTTAGAGCGGGAGGA‑TTTGCCAAATTGCAAATAATCGGTG‑GGG‑AAg > 2:8084484/3‑72 (MQ=255) aGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGGAGA‑ATTTCCCAACTTCCAAACCTCCCGA‑GAG‑AAgg > 2:8228305/1‑72 (MQ=255) ttAATTATCAACCAGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGaaa < 2:7793754/72‑1 (MQ=255) atttATCACCCAGGAATCATCTTAGAGC‑GGATGA‑TTTGCAAAACTGAAAATCATCCGTA‑GAG‑AAGGGAAATg < 2:8912504/70‑1 (MQ=255) aaTTATCAACCAGGAATCATCTTAGAGCGGGATGT‑TTTGCCAAACTGCAAATAATCCGT‑‑GAGAAAGGGaaag > 2:8686331/1‑71 (MQ=255) aTTATCAACCAGGAATCATCTTAGAGCGGGATGA‑TTTGCCCAAAGCCAAAACACCGGTG‑AAG‑AAGGGgaagg > 2:4538573/1‑70 (MQ=255) aTTATCAACCAGGAATCATCTTAGAGC‑GGATGA‑TTTTCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGGAATgg > 2:9665762/1‑72 (MQ=255) aTTATCAACCAGGAATCATCTTAGAGC‑GGAAGA‑TTTTCCAAAACTCAAAACATCCCTA‑GGG‑AAGGGGAAAgg > 1:7333242/1‑72 (MQ=255) ttATCAACCAGGAATCATCTTAGAGCGGGAGGA‑TTTGCCCAAATCCCAAACACCCGCA‑gga‑aaggggaaagg > 2:3081780/1‑72 (MQ=255) ttATCAACCAGGAATCATCTTAGAGC‑GGGTGATTTTTCCAAACTGC‑AATAATCCCTA‑GAG‑GAGGGGAAAggg > 1:8876837/1‑71 (MQ=255) tATCAACCAGGAATCATCTTAGAGCGGGATAA‑TTTTCCAAATGGAAAATATCCCTTG‑GGG‑AAGGGAAAGGGt > 1:5055148/1‑72 (MQ=255) tCAACCAGGAATCATCTTAGAGC‑GTATGA‑TTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGAAATGGTTaa > 1:6902873/1‑72 (MQ=255) cAACCAGGAATCATCTTAGAGCGGGGGGA‑TTTTTCCAAATCCAAAACCTCCCTT‑GAG‑AAGGGAAAAGGGTaa > 1:3014557/1‑72 (MQ=255) cAACCAGGAATCATCTTAGAGC‑GGAGGA‑TTTTCCAAAATGCAAATCATCCGTA‑GAG‑AAGGGAAAGGGGTaaa > 1:7772050/1‑72 (MQ=255) aaCCAGGAATCATCTTAGAGC‑GGGAGATTTTTCCAAAAGCCAAAAAATCC‑TC‑GAGAAAGGGAAAAGGTTaaa > 1:5336888/1‑72 (MQ=255) aaCCAGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAACTGCCAATCATCCGTA‑GAG‑AAGGGGAATGGTTAAAt > 2:9657997/1‑72 (MQ=255) ccAGGAATCATCTTAGAGCGGGATGA‑TTTTCCCAAAT‑CAAAATATCCCCAGGAG‑AAGGGAAACGGTTaaagt > 2:4412266/1‑70 (MQ=255) cAGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGGAATGGTTAAATGTc > 1:7811685/1‑72 (MQ=255) ggaaaTCATTTTAGAGG‑GGATGA‑TTTGCAAAACGCAAAATCATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCa < 2:3927141/69‑1 (MQ=255) aGGAATCATCTTAGAGC‑GGGTGA‑TTTTCCCAACTGCCAATCCTCCGTA‑GGG‑AAGGGGAATGGTTTAATGTCa > 2:9548573/1‑72 (MQ=255) aGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCa < 1:6953903/72‑1 (MQ=255) aGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAAATGCAAATCATCCGTA‑GAG‑AAGGGGAATGGTTAAATGTCa > 2:9729135/1‑72 (MQ=255) ggAATCATCTTAGAGC‑GTATGA‑TTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCaa < 2:4565418/72‑1 (MQ=255) tcatcTTAGAGC‑GGATGA‑TTTGCAAAACTGCAAATCACCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCAacgac < 1:9313313/72‑1 (MQ=255) tcTTATAGC‑GGATGA‑TTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGAAATTGTTAAATGTCAACGACGTg > 1:2269844/1‑72 (MQ=255) tcTTAGAGC‑GGATGA‑TTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCAACGACGTg < 2:7172268/72‑1 (MQ=255) ttAGAGC‑GGATGA‑TTTGCAAAACTGCAAATCATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCAACGACGTGaa < 2:7146255/72‑1 (MQ=255) tAGGGC‑GGTTGA‑TTGGCAAAACTGCAAATCATCNGTA‑GAG‑NAGGGAAATGGTTAAATGTCAACGACGTGAAc < 1:581572/72‑1 (MQ=255) gagC‑GGATGA‑TTTGCCAAACTGAAAATCATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCAACGACGTGAACgg < 1:6643848/72‑1 (MQ=255) agC‑GGATGA‑TTTCCAAAACTGAAATTAATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCAACGACGTGAACGGt < 1:2654277/72‑1 (MQ=255) gC‑GGATGA‑TTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCAACGACGTGAACGGTg > 1:5159351/1‑72 (MQ=255) gC‑GGAAGA‑CTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCAACGACGTGAACgggg > 2:2916989/1‑70 (MQ=255) c‑GGATGA‑TTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCAACGACGTGAACGGGGa > 1:4999819/1‑72 (MQ=255) | TAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGC‑GGATGA‑TTTGCCAAACTGCAAATCATCCGTA‑GAG‑AAGGGAAATGGTTAAATGTCAACGACGTGAACGGTGA > NC_012967/1341852‑1341993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |