Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_012967 3,482,737 G→A W351* (TGG→TGA)  malT → HTH‑type transcriptional regulator MalT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0129673,482,7370GA100.0% 511.5 / NA 163W351* (TGG→TGA) malTHTH‑type transcriptional regulator MalT
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (73/90);  total (73/90)

Only 100 of 200 total aligned reads displayed.

GCGCCAGCGCTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCG  >  NC_012967/3482668‑3482805
                                                                      |                                                                    
gggcCAGGGCTGCGAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAAt                                                                    <  2:9692974/70‑1 (MQ=255)
 cgcCAGCGCTGCCAGTGGGAA‑CTGGCGGCGGGGCTGCCGGAAAACCACCGTGCCGCCGCCGGAAGCTGAATg                                                                   >  2:5198970/1‑72 (MQ=255)
  gcCAGCGCTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATgg                                                                  <  1:8244331/72‑1 (MQ=255)
    cAGCGCTGCCGGTGGAAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGcc                                                                <  1:3509164/72‑1 (MQ=255)
    cAGCGCTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGcc                                                                <  1:9181106/72‑1 (MQ=255)
    cAGCGCTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGcc                                                                >  1:4957178/1‑72 (MQ=255)
    cAGCGCTGCCAGGGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGcc                                                                <  1:2206265/72‑1 (MQ=255)
      gcgcTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGGAAGCTGAATGGCCCa                                                              >  2:7401538/1‑72 (MQ=255)
      gcgcTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCa                                                              <  1:7492278/72‑1 (MQ=255)
      gcgcTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCa                                                              <  2:7658554/72‑1 (MQ=255)
      gcgcTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAAACCACCGTGCCGCGCCGGAAAGCGGAATGGgccc                                                              >  1:4445804/1‑71 (MQ=255)
       cgcTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAg                                                             <  2:9158063/72‑1 (MQ=255)
       cgcTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCAGCAGAAAGCTGAATGGCCCAg                                                             <  1:7226690/72‑1 (MQ=255)
       cgcTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGGGCCGCCGCCGAAAGGTGGATGGGCCAg                                                             >  1:1005041/1‑72 (MQ=255)
       cgcTGCAAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCat                                                             <  1:7283188/72‑2 (MQ=255)
        gcggCCAGTGGGAA‑CGGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAgg                                                            <  2:2579355/69‑1 (MQ=255)
        gcTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAgg                                                            <  2:8133908/72‑1 (MQ=255)
          tGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCCGGAAACCCCCGGGCCGCCGCCGAAAGCTGAAAGGGCCCgggg                                                          >  2:92537/1‑71 (MQ=255)
           gCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGAt                                                         <  1:8656713/72‑1 (MQ=255)
           gCCAGTGGGAA‑CGGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGAt                                                         <  2:3548738/72‑1 (MQ=255)
            gcAGTGGGAACCGGGGGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGAt                                                         <  2:996983/71‑1 (MQ=255)
            ccAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCCGAAAGCTGAATGGCCCATGGCtt                                                        >  1:7015583/1‑72 (MQ=255)
            ccAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGAtt                                                        >  2:4054139/1‑72 (MQ=255)
            ccAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGAtt                                                        >  1:2772208/1‑72 (MQ=255)
             cggTGGGAA‑CTGGCGGCGGAGATGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGAttt                                                       <  2:745732/70‑1 (MQ=255)
             cAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGAttt                                                       >  1:9724378/1‑72 (MQ=255)
              agggggAG‑CGGGGGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTc                                                      <  2:160900/69‑1 (MQ=255)
              aGTGGGAA‑CTGGCGGCGGAGCTGCCGCAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGACTTc                                                      >  1:1859383/1‑72 (MQ=255)
                tGGGAA‑CGCGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTccc                                                    <  2:2434156/72‑1 (MQ=255)
                ggggAA‑CGGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTccc                                                    <  1:7872320/71‑1 (MQ=255)
                 gggAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAACTGAATGGCCCAGGGAGTTCCca                                                   >  1:6852219/1‑72 (MQ=255)
                  ggAC‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCcag                                                  <  1:5726774/72‑1 (MQ=255)
                  ggAA‑CTGGCGGCTGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCcag                                                  >  1:7766186/1‑72 (MQ=255)
                  ggAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGGTTTCCcag                                                  >  2:3368878/1‑72 (MQ=255)
                  ggAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCcag                                                  <  1:5155720/72‑1 (MQ=255)
                  ggAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGATGAATGGCCCCGGGAGTTccccg                                                  >  2:3049588/1‑70 (MQ=255)
                   gAA‑CTGGCGTCGGAGNTGNCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCcagc                                                 <  2:7024826/72‑1 (MQ=255)
                   gAA‑CTGGCGGCGTAGCTGCCGGAAATCCAGCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCcagc                                                 <  2:6017600/72‑1 (MQ=255)
                   gAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCcagc                                                 <  1:7515926/72‑1 (MQ=255)
                   gAA‑CGGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCcagc                                                 <  2:7840428/72‑1 (MQ=255)
                         ggcggcGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCcagcgcagc                                            <  1:7259095/72‑1 (MQ=255)
                          gctgcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCcagcgcagcg                                           <  1:8613160/69‑1 (MQ=255)
                           cggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGa                                          <  2:4937066/72‑1 (MQ=255)
                           cggcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCACCGa                                          >  1:9501152/1‑72 (MQ=255)
                             gcggAGCTGCCGGAAATCCACCGTGCCGCCGCATAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGAtt                                        <  2:9567910/72‑1 (MQ=255)
                             gcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGAtt                                        >  1:475536/1‑72 (MQ=255)
                             gcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGAtt                                        >  1:3029233/1‑72 (MQ=255)
                             gcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGAtt                                        >  1:5610392/1‑72 (MQ=255)
                             gcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGAtt                                        <  2:3122069/72‑1 (MQ=255)
                             gcggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGACTTCCcagcgcagcgcgt                                        >  2:8252437/1‑69 (MQ=255)
                             gcgcAGCAGCCGAAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGAtt                                        <  1:1588132/72‑1 (MQ=255)
                              cggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATtc                                       >  1:9657929/1‑72 (MQ=255)
                              cggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATtc                                       <  1:8042548/72‑1 (MQ=255)
                               ggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATTGCCCAGGGATTTCCCAGCGCAGCGAGtca                                      >  1:716370/1‑72 (MQ=255)
                               ggAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATtca                                      >  1:8548812/1‑72 (MQ=255)
                                 aGCTGCCGGAAATCCACCGTGCCGCCGCANAAAGCTGAATGGCCCAGGGATTTCCCAGCGCCGCGATtcatc                                    >  2:856731/1‑72 (MQ=255)
                                 aGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATtcatc                                    >  2:2792615/1‑72 (MQ=255)
                                 aGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATtcatc                                    <  2:3296090/72‑1 (MQ=255)
                                  gCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATtcatca                                   <  1:2550830/72‑1 (MQ=255)
                                    tGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGCATGGCCCAGGGATTTCCCAGCGCAGCGCGtcatctct                                 >  2:3739457/1‑69 (MQ=255)
                                    tGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATg                                 <  1:9897194/72‑1 (MQ=255)
                                    ggCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATg                                 <  2:2135731/71‑1 (MQ=255)
                                     gacGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATgc                                <  2:6717021/70‑1 (MQ=255)
                                     gCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATgc                                <  2:8817987/72‑1 (MQ=255)
                                     gCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGAAGCGATTCATCATgc                                <  1:4261148/72‑1 (MQ=255)
                                      ccGGAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATgcg                               <  2:9394436/72‑1 (MQ=255)
                                        ggAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCt                             <  2:4483247/72‑1 (MQ=255)
                                         gAAATCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCTATTCATCATGCGCTg                            >  1:3468124/1‑72 (MQ=255)
                                          aaaTCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTgg                           <  1:6445086/72‑1 (MQ=255)
                                          aaaTCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTgg                           <  2:368428/72‑1 (MQ=255)
                                           aaTCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTgtc                          <  1:1499853/72‑3 (MQ=255)
                                           aaTCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTggc                          >  2:6356905/1‑72 (MQ=255)
                                            aTCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTggcg                         >  2:4121274/1‑72 (MQ=255)
                                            aTCCACCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGAGCCggcg                         >  2:6338663/1‑72 (MQ=255)
                                             tCCACCGTGCCGCCGCAGAAAGCTGAATGGCCAAGGGATTTCCCAGCGCAGCGATTCATAATGCGCTggcgg                        >  2:6582107/1‑72 (MQ=255)
                                                aCCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTggcggccg                     >  1:6873931/1‑70 (MQ=255)
                                                aCCGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAg                     <  2:1292414/72‑1 (MQ=255)
                                                 ccGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAgg                    <  2:2008057/72‑1 (MQ=255)
                                                 ccGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAgg                    <  1:2716272/72‑1 (MQ=255)
                                                 ccGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAgg                    >  2:4337508/1‑72 (MQ=255)
                                                  cGTGCCGCCGCAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGc                   >  2:4362016/1‑72 (MQ=255)
                                                   gTGCCGCCGCAGAAAGCTGAATGGCCCNGGGATTTCCCAGCNCAGCGATTCATCATGCGCTGGCGGCAGGCg                  >  1:490142/1‑72 (MQ=255)
                                                     gccgccGCAGAAAGCTGAATGGCCGAGGGATTGCCCGGCGCGGCGATTCATCATGCGCTGGCGGCAGGCGAt                <  2:9733275/72‑1 (MQ=255)
                                                       cgccgcAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATgc              >  1:9311782/1‑72 (MQ=255)
                                                       cgccgcAGAAAGCGTAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATgc              <  1:334453/72‑1 (MQ=255)
                                                         ccgcAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATgcgc            >  1:4419166/1‑72 (MQ=255)
                                                          cgcAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATGCGCt           <  2:6534213/72‑1 (MQ=255)
                                                           gcAGAAAGGGGAAGGGCCCGGGGATTTCCCGGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATGCGCTg          <  1:4587206/72‑1 (MQ=255)
                                                           gcAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCCGGCGgcgcgccg          >  1:8526793/1‑70 (MQ=255)
                                                           gcAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCCGGCGATGCGCTg          >  1:115909/1‑72 (MQ=255)
                                                           gcAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAggcgcggcgccg          >  2:4567143/1‑70 (MQ=255)
                                                           gcAGAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATGCGCTg          >  1:3996404/1‑72 (MQ=255)
                                                            cAGAAAGCTAAGTGGCCAGGGGATTTCCAGGCGCGGCGTTTCATCATGCGCTGGCGGCAGGCGATGCGCTGa         <  2:1006452/72‑1 (MQ=255)
                                                              gAAAGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATGCGCTGAtg       <  2:5610390/72‑1 (MQ=255)
                                                               aaaGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATGCGCTGAtgc      <  2:8463314/72‑1 (MQ=255)
                                                                 aGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTTGCGGCAGGCGAGGCGCTGAtgcgg    >  2:9065056/1‑70 (MQ=255)
                                                                 aGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATGCGCTGAtgctg    <  1:8912198/72‑1 (MQ=255)
                                                                 aGCTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAAGCGATGCGCTGCagctg    >  1:6830948/1‑72 (MQ=255)
                                                                   cTGAATGGCCGAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTgcg  <  1:5215662/72‑1 (MQ=255)
                                                                   cTGAATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATGAGCCGATGCTgcg  >  1:287420/1‑72 (MQ=255)
                                                                      |                                                                    
GCGCCAGCGCTGCCAGTGGGAA‑CTGGCGGCGGAGCTGCCGGAAATCCACCGTGCCGCCGCAGAAAGCTGGATGGCCCAGGGATTTCCCAGCGCAGCGATTCATCATGCGCTGGCGGCAGGCGATGCGCTGATGCTGCG  >  NC_012967/3482668‑3482805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑