| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 3482701 = | 86 (0.340) | 10 (0.050) +CCCGCCGCCAGTTCCCACT |
6/104 | 12.8 | 14.6% | coding (1017/2706 nt) | malT | HTH‑type transcriptional regulator MalT |
| ? | NC_012967 | = 3482706 | 75 (0.300) | coding (1022/2706 nt) | malT | HTH‑type transcriptional regulator MalT | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/3482738‑3482701‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAA < NC_012967/3482706‑3482636 ||||||||||||||||||| TCCAGCTCTCTGCGGCGGCACGGTGGATTCCCGGCAGCCCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCC < 2:3938527/72‑1 GCGCCACGGTGGATTCCCGGCCGCCCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCA < 2:6347800/72‑1 TTTCGGGCGGCCCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGG < 2:8757626/72‑1 gcgCGGCACCCCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGA < 2:8711424/69‑1 gcCAGCCCCCCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTT < 1:2219626/70‑1 GGCAGCCCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTT < 1:8663410/72‑1 ccCCCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACC < 2:3075112/70‑1 cGCCCCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACC < 2:1226313/71‑1 acCCCCGCCGCCAGTTCCAACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGNGCAGGAAGTTACC < 1:2937282/70‑1 CCCCCCCGCCAGTTCCCACGGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAA < 2:3820417/72‑1 CCGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAAC < 1:7749288/72‑1 CCGCCGCCAGTTCCCACTGGCAGCGCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAAC < 1:8803828/72‑1 CCGCCGCCAGTTCCACCTGGCAGCCCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAAC < 2:6306685/72‑1 gcCCGCCAGTTCCCACGGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACA < 1:2850537/70‑1 CGCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACA < 2:7254303/72‑1 GCCGCCAGTTCCCACTGGCAGCTCCGCCGCCCGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAG > 1:7177936/1‑72 GCCGCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTAACAAACAG > 1:366027/1‑72 CCGCCAGTTCCCACTGGCGGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGC < 1:4050710/72‑1 CGCCAGTTCCCACTGGCCGCTCCGCCGCCAGTTCCCACTGGCAGCGCCCGCCCCGGACGTTTCCAAACAGCG > 2:7363731/1‑72 GCCAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGG > 1:5233429/1‑72 GCCAGTCCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGG < 1:1822248/72‑1 CCAGTTCCCACTGGCAGCTCNGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCNGG < 2:839920/72‑1 CAGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGT < 1:2297102/72‑1 AGTTCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGGTACCACACAGCGGGTG > 2:1629611/1‑72 gCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATA < 2:8655597/71‑1 cCCCACGGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATA < 1:7644073/71‑1 TCCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATA < 2:9106939/72‑1 CCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCCGGAAGTTACCAAACAGCGGGTGATAG > 1:8351502/1‑72 CCCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAG < 1:229974/72‑1 CCCACGGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAG < 2:2784130/72‑1 CCACTGGCATCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGC < 2:5356670/72‑1 CCACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTAACAAACAGCGGGTGATAGC > 2:8657469/1‑72 CACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCA < 1:7412902/72‑1 ACTGGCAGCTCCGCCGCCAGTTCCCATTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAG < 1:4526681/72‑1 ACTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAG > 1:7509784/1‑72 CTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGA > 1:9168626/1‑72 CTGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGA < 1:7069221/72‑1 TGGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAA < 2:2444130/72‑1 TGGCAGCTCCGCCCCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAA > 2:6273733/1‑72 ||||||||||||||||||| TCCAGCTTTCTGCGGCGGCACGGTGGATTTCCGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012967/3482738‑3482701‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCAGCTCCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAA < NC_012967/3482706‑3482636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |