Predicted mutation
evidence seq id position mutation annotation gene description
RA CP002094 637,425 (A)7→6 coding (297/1164 nt) LLNZ_03315 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP002094637,4190A.100.0% 392.9 / NA 81coding (303/1164 nt)LLNZ_03315hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (44/37);  total (44/37)

CTGGTGTAGGCTACTGATAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGTTTAGCAAATA  >  CP002094/637321‑637513
                                                                                                  |                                                                                              
cTGGTGTAGGCTACTGATAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCa                                                                                                >  1:1636585/1‑99 (MQ=255)
       aGGCTACTGATAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCaaaaaacc                                                                                         <  1:406224/99‑3 (MQ=255)
         gCTACTGATAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCaaaaaaccta                                                                                       >  2:261778/1‑95 (MQ=255)
         gCTACTGATAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCaaaaaaccta                                                                                       <  1:1387465/99‑5 (MQ=255)
          cTACTGATAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCtaa                                                                                     <  2:410005/99‑1 (MQ=255)
            aaaaaTAATGTTAATATTTCTATAAATATTTTAAATTAAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAATCCtaata                                                                                   <  1:250027/95‑1 (MQ=255)
             cTGATAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCtaataa                                                                                  >  1:340689/1‑99 (MQ=255)
               gATAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATg                                                                                <  1:1192140/99‑1 (MQ=255)
                aTAATGTTGAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGt                                                                               <  2:1107610/99‑1 (MQ=255)
                aTAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGt                                                                               <  1:1424279/99‑1 (MQ=255)
                 tAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTc                                                                              >  1:1300419/1‑99 (MQ=255)
                 tAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTc                                                                              >  2:645438/1‑99 (MQ=255)
                     gTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCgaga                                                                          >  2:1458554/1‑99 (MQ=255)
                     gTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCgaga                                                                          >  2:260258/1‑99 (MQ=255)
                      ttAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGagag                                                                         >  1:861298/1‑99 (MQ=255)
                        aaGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGa                                                                       <  2:817169/99‑1 (MQ=255)
                         aGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGAt                                                                      >  1:734073/1‑99 (MQ=255)
                           cTTTCTTAAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATta                                                                    <  1:669323/99‑1 (MQ=255)
                           cTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATta                                                                    <  1:538532/99‑1 (MQ=255)
                           cTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATta                                                                    <  2:730291/99‑1 (MQ=255)
                             ttCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATtata                                                                  >  1:1559630/1‑99 (MQ=255)
                              tctcTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATAc                                                                 <  2:125017/99‑1 (MQ=255)
                              tctcTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATAc                                                                 <  1:737952/99‑1 (MQ=255)
                              tctcTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATAc                                                                 >  1:1091658/1‑99 (MQ=255)
                              tctcTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATAc                                                                 <  2:693640/99‑1 (MQ=255)
                               ctctAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACt                                                                >  1:1185222/1‑99 (MQ=255)
                                tctAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACtt                                                               <  1:381548/99‑1 (MQ=255)
                                 ctAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTa                                                              >  1:935270/1‑99 (MQ=255)
                                   aaaGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTaaa                                                            <  2:373774/99‑1 (MQ=255)
                                    aaGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAAc                                                           >  2:526833/1‑99 (MQ=255)
                                     aGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACt                                                          >  2:1076247/1‑99 (MQ=255)
                                      gATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACtt                                                         >  1:656396/1‑99 (MQ=255)
                                       aTTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTg                                                        >  2:1579106/1‑99 (MQ=255)
                                        ttttAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGc                                                       >  2:1227256/1‑99 (MQ=255)
                                        ttttAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGc                                                       <  2:1573484/99‑1 (MQ=255)
                                         tttAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCt                                                      <  1:1403501/99‑1 (MQ=255)
                                         tttAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCt                                                      <  1:75333/99‑1 (MQ=255)
                                          ttAAATTTCGATTTTGAGACATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAACCCTAATAATGTCGAGAGGATTATACTTAAACTTGCtg                                                     <  2:1254509/99‑2 (MQ=255)
                                          ttAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTa                                                     >  1:77285/1‑99 (MQ=255)
                                              aTTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGa                                                 >  2:160403/1‑99 (MQ=255)
                                              aTTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGa                                                 >  2:1414523/1‑99 (MQ=255)
                                               tttAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGAc                                                >  1:1603980/1‑99 (MQ=255)
                                                ttAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACa                                               <  1:410503/99‑1 (MQ=255)
                                                 tAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAg                                              >  2:1324958/1‑99 (MQ=255)
                                                 tAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAg                                              <  1:1360607/99‑1 (MQ=255)
                                                   gATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGt                                            >  2:79561/1‑99 (MQ=255)
                                                   gATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGt                                            >  2:88661/1‑99 (MQ=255)
                                                    aTTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTg                                           >  1:1275938/1‑99 (MQ=255)
                                                     ttttGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGc                                          <  2:190824/99‑1 (MQ=255)
                                                     ttttGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGc                                          >  2:1620026/1‑99 (MQ=255)
                                                     ttttGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGc                                          >  2:899622/1‑99 (MQ=255)
                                                     ttttGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGc                                          <  1:845877/99‑1 (MQ=255)
                                                        tGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGa                                       <  1:430180/99‑1 (MQ=255)
                                                          aTAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACt                                     >  2:604384/1‑99 (MQ=255)
                                                           tAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACtt                                    <  1:137388/99‑1 (MQ=255)
                                                           tAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACtt                                    >  2:154572/1‑99 (MQ=255)
                                                           tAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTCATACTGAGAGGTGACGACtt                                    >  1:759938/1‑99 (MQ=255)
                                                             aaTCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTcc                                  >  1:51894/1‑99 (MQ=255)
                                                             aaTCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTcc                                  <  2:317550/99‑1 (MQ=255)
                                                             aaTCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTcc                                  >  1:162595/1‑99 (MQ=255)
                                                              aTCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCa                                 >  1:416721/1‑99 (MQ=255)
                                                               tCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAg                                <  1:1227256/99‑1 (MQ=255)
                                                               tCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAg                                <  2:1612121/99‑1 (MQ=255)
                                                                  caGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTaa                             >  2:1150325/1‑99 (MQ=255)
                                                                   aGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTaaa                            <  1:188636/99‑1 (MQ=255)
                                                                   aGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTaaa                            >  1:757918/1‑99 (MQ=255)
                                                                   aGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTaaa                            <  1:1150418/99‑1 (MQ=255)
                                                                    gCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAAt                           >  1:983854/1‑99 (MQ=255)
                                                                     cTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATg                          >  1:610508/1‑99 (MQ=255)
                                                                        ttCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCaa                       <  1:753688/99‑1 (MQ=255)
                                                                         tCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAAt                      <  1:1039214/99‑1 (MQ=255)
                                                                         tCTTTAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAAt                      >  1:985143/1‑99 (MQ=255)
                                                                           tttAAGTAAATCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAAttt                    >  2:1001531/1‑99 (MQ=255)
                                                                                   aaTCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGt            >  2:772587/1‑99 (MQ=255)
                                                                                   aaTCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGt            <  2:1113817/99‑1 (MQ=255)
                                                                                    aTCCATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGtt           >  2:1318867/1‑99 (MQ=255)
                                                                                       cATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGTTTAg        >  1:623882/1‑99 (MQ=255)
                                                                                       cATAAGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGTTTAg        <  2:840657/99‑1 (MQ=255)
                                                                                           aGAAACCAAAAAACCTAATAATGTCGAGATGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGTTTAGCaaa    <  1:1291544/99‑1 (MQ=255)
                                                                                           aGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGTTTAGCaaa    <  2:1554092/99‑1 (MQ=255)
                                                                                           aGAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGTTTAGCaaa    >  1:1459454/1‑99 (MQ=255)
                                                                                           aGAAACCAAAAAACCTAATAATGTCGAGAGGATTATAATTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGTTTAGCaaa    <  1:1461597/99‑1 (MQ=255)
                                                                                            gAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGTTTAGCAAAt   >  1:786390/1‑99 (MQ=255)
                                                                                            gAAACCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGTTTAGCAAAt   >  1:1358298/1‑99 (MQ=255)
                                                                                             aaaCCAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGTTTAGCAAATa  <  2:1013903/99‑1 (MQ=255)
                                                                                                  |                                                                                              
CTGGTGTAGGCTACTGATAATGTTAAGCTTTCTCTAAAGATTTTAAATTTAGATTTTGATAAATCACAGCTTTTCTTTAAGTAAATCCATAAGAAACCAAAAAAACCTAATAATGTCGAGAGGATTATACTTAAACTTGCTACTGACAGGTGCCGACTTCCAGTAAATGCAATTTGAGAATGTTTAGCAAATA  >  CP002094/637321‑637513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: