| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP002094 | 1,095,659 | (A)7→6 | intergenic (+76/‑149) | LLNZ_05830 → / → LLNZ_05835 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP002094 | 1,095,653 | 0 | A | . | 94.4% | 71.8 / ‑0.7 | 18 | intergenic (+70/‑155) | LLNZ_05830/LLNZ_05835 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (10/7); total (11/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 | |||||||||||
AGACATTAACTTCTGGGGAAAGAAAATAATAAAATTAAAATAAAGTCATCATTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAATAAAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATGAGTATAAATGAGAAAAAAATAATAAAACAAAAA > CP002094/1095555‑1095747 | aGACATTAACTTCTGGGGAAAGAAAATAATAAAATTAAAATAAAGTCATCATTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAataata < 1:13232/99‑1 (MQ=255) aCATTAACTTCTGGGGAAAGAAAATAATAAAATTAAAATAAAGTCATCATTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAATaaa < 1:1114334/99‑1 (MQ=255) aaaTAATAAAATTAAAATAAAGTCATCATTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAAT‑AAAAAATGAAAAATAaataataat < 1:56005/99‑1 (MQ=255) aataatAAAATTAAAATAAAGTCATCATTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAAT‑AAAAAATGAAAAATAAataataata < 2:202296/99‑1 (MQ=255) aataaAATTAAAATAAAGTCATCATTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAATAAAAAAATGAAAAATAAATAATAatata > 1:1190822/1‑99 (MQ=255) ataaAATTAAAATAAAGTCATCATTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAAT‑AAAAAATGAAAAATAAATAATAatatata > 1:227082/1‑99 (MQ=255) taaaattaaaatAAAGTCATCATTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAAT‑AAAAAATGAAAAATAAATAATAatatatat < 2:901235/99‑1 (MQ=255) aaattaaaatAAAGTCATCATTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAAT‑AAAAAATGAAAAATAAATAATAATATATATTg > 2:626110/1‑99 (MQ=255) gTCATCATTTATGATTGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAAT‑AAAAAATGAAAAATAAAGAATAATATATAGTGACAAAAATAAttt < 2:48814/99‑1 (MQ=255) tcatTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAAT‑AAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGAtt > 1:1291524/1‑99 (MQ=255) tcatTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAAT‑AAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGAtt < 2:1218195/99‑1 (MQ=255) gCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAAT‑AAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATg > 1:1292323/1‑99 (MQ=255) tttCTGTTTAATAAAATAAAAATAAATAAATAAT‑AAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATGAGta < 1:1125963/99‑1 (MQ=255) ataaaataaaAATAAATAAATAAT‑AAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATGAGTATAAATGAGaa > 1:832588/1‑99 (MQ=255) aaataaaaataaATAAATAAT‑AAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATGAGTATAAATGAGaaaaa > 1:513678/1‑99 (MQ=255) ataaaaataaaTAAATAAT‑AAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATGAGTATAAATGAGaaaaaaa > 2:1205132/1‑99 (MQ=255) taaaaataaaTAAATAAT‑AAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATGAGTATAAATGAGAAAAAaat < 2:832588/99‑1 (MQ=255) aaaataaaTAAATAAT‑AAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATGAGTATAAATGAGAAAAAaataa > 1:1108001/1‑99 (MQ=255) aaataaataaT‑AAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATGAGTATAAATGAGAAAAAAATAATaaaa > 2:363388/1‑99 (MQ=255) ataaataaT‑AAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATGAGTATAAATGAGAAAAAAATAATAAAACa > 1:721777/1‑99 (MQ=255) taataaAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATGAGTATAAATGAGAAAAAAATAATAAAACaaaaa < 2:1190822/99‑1 (MQ=255) | AGACATTAACTTCTGGGGAAAGAAAATAATAAAATTAAAATAAAGTCATCATTTATGATGGCTTTTTCTGTTTAATAAAATAAAAATAAATAAATAATAAAAAAATGAAAAATAAATAATAATATATATTGACAAAAATAATTTGATTTAATATAATATGAGTATAAATGAGAAAAAAATAATAAAACAAAAA > CP002094/1095555‑1095747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |