| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP002094 | 2498042 = | 131 (1.310) | 3 (0.030) | 3/188 | 13.9 | 2.6% | coding (484/528 nt) | LLNZ_13130 | transcriptional regulator |
| ? | CP002094 | 2498362 = | 97 (1.020) | coding (164/528 nt) | LLNZ_13130 | transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGGCTGATTATCTAGGGACAAAGCAAAAATTTTGGAACGATTTTATGGCTGCTGGTTTATTTTATGTTTTAGGAAATTGGGTGAAAAATGGCTGTCAAGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP002094/2498143‑2498042‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactTCTTCCTTATTTTTGAAGTGCCGATAGAAAGTCATCCGACTCACCCCGGCTTTTTTGCAAACTTCTGTCAATGGCAATTCATTGATTGTATATTTCTC > CP002094/2498362‑2498459 GGGCTGATTATCTAGGGACAAAGCAAAAATTTTGGAACGATTTTATGGCTGCTGGTTTATTTTATGTTTTAGGAAATTGGGTGAAAAATGGCTGTCAAG > 2:1449550/1‑99 GGCTGATTATCTAGGGACAAAGCAAAAATTTTGGAACGATTTTATGGCTGCTGGTTTATTTTATGTTTTAGGAAATTGGGTGAAAAATGGCTGTTAAGA > 1:767769/1‑99 GGCTGATTATCTAGGGACAAAGCAAAAATTTTGGAACGATTTTATGGCTGCTGGTTTATTTTATGTTTTAGGAAATTGGGTGAAAAATGGCTGTCAAGA > 2:1124483/1‑99 GGCTGATTATCTAGGGACAAAGCAAAAATTTTGGAACGATTTTATGGCTGCTGGTTTATTTTATGTTTTAGGAAATTGGGTGAAAAATGGCTGTCAAGA < 2:1290837/99‑1 GGCTGATTATCTAGGGACAAAGCAAAAATTTTGGAACGATTTTATGGCTGCTGGTTTATTTTATGTTTTAGGAAATTGGGTGAAAAATGGCTGTCAAGA < 2:1536202/99‑1 GGCTGATTATCTAGGGACAAAGCAAAAATTTTGGAACGATTTTATGGCTGCTGGTTTATTTTATGTTTTAGGAAATTGGGTGAAAAATGGCTGTCAAGA < 2:878294/99‑1 CTGATTATCTAGGGACAAAGCAAAAATTTTGGAACGATTTTATGGCTGATGGTTTATTTTATGTTTTAGGGAATTTGGTGAAAAATGGCTGTCAAGACT > 2:120415/1‑99 ATTATCTAGGGACAAAGCAAAAATTTTGGAACGATTTTATGGCTGCTGGTTTATTTTATGTTTTAGGAAATTGGGAGGAAAATGGGTGGTAAGACTTtt > 1:31032/1‑97 GAAATTGGGTGAAAAATGGCTGTCAAGACTTCTTCCTTATTTTTGAAGTGCCGATAGAAAGTCATCCGACTCACCCCGGCTTTTTTGCAAACTTCTG > 1:167094/1‑97 GAAATTGGGTGAAAAATGGCTGTCAAGACTTCTTCCTTATTTTTGAAGTGCCGATAGAAAGTCATCCGACTCACCCCGGCTTTTTTGCAAACTTCTG < 2:167094/97‑1 GACTTCTTCCTTATTTTTGAAGTGCCGATAGAAAGTCATCCGACTCACTCCGGCTTTTTTGCAAACTTCTGTCAATGGCAATTCATTGATTGTATATTT > 2:163992/1‑99 TTCTTCCTTATTTTTGAAGTGCCGATAGAAAGTCATCCGACTCACCCCGGCTTTTTTGCAAACTTCTGTCAATGGCAATTCATTGATTGTATATTTCTC < 2:1569030/99‑1 GGGCTGATTATCTAGGGACAAAGCAAAAATTTTGGAACGATTTTATGGCTGCTGGTTTATTTTATGTTTTAGGAAATTGGGTGAAAAATGGCTGTCAAGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP002094/2498143‑2498042‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactTCTTCCTTATTTTTGAAGTGCCGATAGAAAGTCATCCGACTCACCCCGGCTTTTTTGCAAACTTCTGTCAATGGCAATTCATTGATTGTATATTTCTC > CP002094/2498362‑2498459 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |