Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0020941,590,8550AC42.2% 99.6 / 78.8 90G701G (GGT→GGG) LLNZ_08320hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (49/3);  new base C (0/38);  total (49/41)
Fisher's exact test for biased strand distribution p-value = 3.03e-22
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TCTTTTACGGCGGGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGTTCAGACGATTGCG  >  CP002094/1590757‑1590953
                                                                                                  |                                                                                                  
tCTTTTACGGCGGGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGacca                                                                                                    <  2:1386522/99‑1 (MQ=255)
tCTTTTACGGCGGGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGacca                                                                                                    <  2:1563757/99‑1 (MQ=255)
 cTTTTACGGCGGGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGaccac                                                                                                   <  1:314687/99‑1 (MQ=255)
 cTTTTACGGCGGGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGaccac                                                                                                   <  1:1078981/99‑1 (MQ=255)
    ttACGGCGGGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTg                                                                                                <  1:1568725/99‑1 (MQ=255)
     tACGGCGGGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGc                                                                                               <  2:161811/99‑1 (MQ=255)
       cgggggGAGCTTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGAAATAATCATGGCAAAAAGACCCCCTGCCg                                                                                             <  2:1394392/99‑1 (MQ=255)
       cggcggGAGGGTTTTCCGCTAAAAAGAGTATTTTAAAAACAGCAGTTACATTTTTTCTTTCCTTTTTGGGGATAATTATGGCAAAAAAACCAACTCCCg                                                                                             >  2:1024223/1‑99 (MQ=255)
       cggcggGAGCGTTATCAGCTAAAAAGAGTATTTCAGCGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCTTGGAAAAAAGTCCCCCTGCCg                                                                                             <  2:1367491/99‑1 (MQ=255)
         gcggGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTa                                                                                           >  2:368584/1‑99 (MQ=255)
         gcggGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTa                                                                                           >  2:1232474/1‑99 (MQ=255)
         gcggGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTa                                                                                           <  2:373720/99‑1 (MQ=255)
         gcggGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTa                                                                                           >  1:985236/1‑99 (MQ=255)
              aGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTg                                                                                      >  1:62943/1‑99 (MQ=255)
              aGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTg                                                                                      >  2:1491584/1‑99 (MQ=255)
              aGCGTTATCAGCTAAAAAGAGAATTTCAACGACAGCAGGTACATTTTTTTTTTTCTTTTTTGGGATAATCAATGCAAAAAAACCACCCCCCGGAttttt                                                                                      >  2:288706/1‑98 (MQ=255)
                  ttATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCt                                                                                  >  1:521943/1‑99 (MQ=255)
                     tCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCt                                                                               >  1:533393/1‑99 (MQ=255)
                     tCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCt                                                                               >  2:667326/1‑99 (MQ=255)
                     tCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCt                                                                               >  2:931145/1‑99 (MQ=255)
                        gCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGAt                                                                            >  2:674486/1‑99 (MQ=255)
                          tAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGc                                                                          >  1:1392837/1‑99 (MQ=255)
                           aaaaaGATTTTTACAACGACAGCAGTTCCTTTTTCTGTATCCTTTTTGGAAATAATCATGAAAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCa                                                                         <  1:1108427/99‑1 (MQ=255)
                           aaaaaGAGGTTTCAAACAACAGTAGTTCCTTTTTTTGTTTCTTTTTGGGGAAAAATCAGGAAAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCa                                                                         <  1:815650/99‑1 (MQ=255)
                            aaaaGATTATTTCAACGACAGCAGTTACTTTTTCTTTTTCTTTTTTGGGAATAATCATGGAAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCAt                                                                        <  2:1167014/99‑1 (MQ=255)
                            aaaaGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCAt                                                                        >  2:283520/1‑99 (MQ=255)
                             aaaGATTATTCCAACGACAGCAGTTCCTTTTTCTTTATCTTTTTTGGAAATAATCATGGAAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCAtt                                                                       <  1:421140/99‑1 (MQ=255)
                             aaaGAGTTTTTAACGGACAGCATTTACTTTTTCTGTATCTTTTTTGGGAATAATCATGGAAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCAtt                                                                       <  2:1378722/99‑1 (MQ=255)
                             aaaGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCAtt                                                                       >  2:1315094/1‑99 (MQ=255)
                             aaaGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCAtt                                                                       >  2:719013/1‑99 (MQ=255)
                              aaGATTTTTACAACGACAGCATTTACTTTTTTTTTATCTTTTTGGGAAATAATCAGGGAAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCAttt                                                                      <  1:1351923/99‑1 (MQ=255)
                               agagTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCAtttt                                                                     >  1:371538/1‑99 (MQ=255)
                               agagTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCAtttt                                                                     >  2:309156/1‑99 (MQ=255)
                               agagTATTTCAACGACAGAAGTTCCTTTTTCTGTATCCTTTTGGGGAATAATCATGGAAAAAAGACCCCCTGCCGTATTTTGGGCTTCTGATGCAtttt                                                                     <  2:1139302/99‑1 (MQ=255)
                                  ttATTTCAACGACAGCAGTTACTTTTTCTGTATCTTTTTTGGAAATAATCATGGAAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTc                                                                  <  2:521943/98‑1 (MQ=255)
                                   tATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTcc                                                                 >  2:729928/1‑99 (MQ=255)
                                    aTTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCa                                                                >  1:1253507/1‑99 (MQ=255)
                                       tCAACGACGGCAGTTACTTTTTCTGTATCTTTTTGGGAAATAACCATGGAAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAg                                                             <  2:1092797/99‑1 (MQ=255)
                                        cAACGACATCAGTTACTTTTTCTGTATCTTTTTGGGGAATAATCATGAAAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGa                                                            <  1:281002/99‑1 (MQ=255)
                                        cAACGACAGCAGTTACTTTTTTTTTTTTCTTTTGGGAAAAAATCATGACAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGa                                                            <  1:229384/99‑1 (MQ=255)
                                          aCGACAGCATTTATTTTTTTTTTATCTTTTTGGGAAATAATAAGGAAAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATa                                                          <  1:1033245/99‑1 (MQ=255)
                                          aCGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATa                                                          >  1:621573/1‑99 (MQ=255)
                                            gACAGCAGTTTCTTTTTCTTTATCTTTTTTGGGAAAAATCATGGAAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAAt                                                        <  2:114639/99‑1 (MQ=255)
                                            gACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTACTGATGCATTTTGTCCAAAGATAAt                                                        >  1:536839/1‑99 (MQ=255)
                                             aCAGCAGTTACTTTTTCTTTATCTTTTTTGGGAAAAATCAGGAAAAAAAGACCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAAtt                                                       <  2:1527986/99‑1 (MQ=255)
                                             aCAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAAtt                                                       >  2:992856/1‑99 (MQ=255)
                                             aCAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAAtt                                                       >  1:363336/1‑99 (MQ=255)
                                              cagcagTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAAttt                                                      >  2:1202572/1‑99 (MQ=255)
                                              cagaagTTCCTTTTTCTGTAGCTTTTTGGGGAATAATGTTGCAAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAAttt                                                      <  2:1526837/99‑1 (MQ=255)
                                                gcagTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTc                                                    >  2:1405300/1‑99 (MQ=255)
                                                  agTTACTTTTTCTTTATCTTTTGTGGGAATAATCATGAAAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTccc                                                  <  1:62038/99‑1 (MQ=255)
                                                  agTTACATTTTTTGTATCTTTTTTGGAAATAATCATGGAAAAAAGACCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTccc                                                  <  2:931751/99‑1 (MQ=255)
                                                     tattttttCTGTTTCTTTTTGGGAAATAATCAGGAAAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCAtt                                               <  1:735130/95‑1 (MQ=255)
                                                     tACTTTTTCTTTTTTTTTTTTGGAAATAATCAAGACAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCAtt                                               <  1:1641700/99‑1 (MQ=255)
                                                     tACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTTTGATGCATTTTGTCCAAAGATAATTTTCCCCtt                                               >  1:1497013/1‑99 (MQ=255)
                                                      aatttttATGTATTTTTTTTGGAAATAATAATGGCAAAAAGACCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCAttt                                              <  2:689042/96‑1 (MQ=255)
                                                       cATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTc                                             >  1:334064/1‑99 (MQ=255)
                                                         ttttCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCtt                                           >  2:1147092/1‑99 (MQ=255)
                                                             cTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTttgtt                                       >  2:255173/1‑99 (MQ=255)
                                                               gTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGa                                     >  1:1372668/1‑99 (MQ=255)
                                                               gTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGa                                     >  1:1098385/1‑99 (MQ=255)
                                                                tATCTTTTTGGGAAATAATCATGGCAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGaa                                    <  2:13621/99‑1 (MQ=255)
                                                                tATCCTTTTTGGTAATAATTATGGAAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGaa                                    <  2:519596/99‑1 (MQ=255)
                                                                 aTCTTTTTTGGAAATAATCATGCAAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAAc                                   <  1:755340/99‑1 (MQ=255)
                                                                  tCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACt                                  >  1:929924/1‑99 (MQ=255)
                                                                    cTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTtg                                >  1:607804/1‑99 (MQ=255)
                                                                     ttttgGGAAATAATCATGGAAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTtgt                               <  1:176421/99‑1 (MQ=255)
                                                                      tttgGGAAATAATCATGGAAAAAACACCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTtgtg                              <  1:939177/99‑1 (MQ=255)
                                                                       tttGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGc                             >  2:76666/1‑99 (MQ=255)
                                                                        ttGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCa                            >  1:404847/1‑99 (MQ=255)
                                                                         tGGGAATAATCATGAAAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCAt                           <  1:521200/99‑1 (MQ=255)
                                                                         tGGAAATAATCATGGAAAAAAGACCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCAt                           <  2:346747/99‑1 (MQ=255)
                                                                          gggAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCAtt                          >  2:214643/1‑99 (MQ=255)
                                                                           ggAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTa                         >  2:626437/1‑99 (MQ=255)
                                                                            gAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAg                        >  1:402365/1‑99 (MQ=255)
                                                                            gAAAAATCATGGAAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAg                        <  1:1351243/99‑1 (MQ=255)
                                                                             aataatCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAgg                       >  1:526185/1‑99 (MQ=255)
                                                                              ataatCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGa                      >  2:1399452/1‑99 (MQ=255)
                                                                              aaaatCATGCCAAAAACCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGa                      <  1:1310800/97‑1 (MQ=255)
                                                                               taatCATGGAAAAAACACCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGaa                     <  1:651471/99‑1 (MQ=255)
                                                                                aatCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAat                    >  1:1403423/1‑99 (MQ=255)
                                                                                 atCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAata                   >  1:1449051/1‑99 (MQ=255)
                                                                                  tCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAatat                  >  1:128463/1‑99 (MQ=255)
                                                                                   cATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAAtata                 >  2:319685/1‑99 (MQ=255)
                                                                                    aTGGAAAAAAGCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAg                <  2:1653703/99‑1 (MQ=255)
                                                                                     tGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGt               >  2:445678/1‑99 (MQ=255)
                                                                                     tGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGt               >  1:1579183/1‑99 (MQ=255)
                                                                                      ggCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGtt              >  1:440564/1‑99 (MQ=255)
                                                                                          aaaaGCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGTTCAGa          <  1:107844/99‑1 (MQ=255)
                                                                                          aaaaGCCCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGTTCAGa          <  1:714842/99‑1 (MQ=255)
                                                                                          aaaaCACCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGTTCAGa          <  1:1119117/99‑1 (MQ=255)
                                                                                              gACCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGTTCAGACGAt      <  2:1000176/99‑1 (MQ=255)
                                                                                              gACCCCCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGTTCAGACGAt      <  1:955300/99‑1 (MQ=255)
                                                                                              gACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGTTCAGACGAt      >  1:1520156/1‑99 (MQ=255)
                                                                                                  accTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGTTCAGACGATTGCg  >  1:974736/1‑99 (MQ=255)
                                                                                                  |                                                                                                  
TCTTTTACGGCGGGAGCGTTATCAGCTAAAAAGAGTATTTCAACGACAGCAGTTACATTTTCTGTATCCTTTTTGGGAATAATCATGGCAAAAAGACCACCTGCCGTATTTTGGGCTTCTGATGCATTTTGTCCAAAGATAATTTTCCCATTTCTTTGTTGAACTTGTGCATTAGGAATATAGTTCAGACGATTGCG  >  CP002094/1590757‑1590953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑