| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP002094 | 515,976 | 0 | G | . | 40.0% | ‑5.2 / 12.5 | 11 | noncoding (1872/2901 nt) | LLNZ_r13413 | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base G (4/2); new base . (1/3); total (5/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.72e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGGTGATGTATAGGGGGTGACGCCTGCCCGGTGCTGGAAGGTT‑AAGAGGAGTGCTTAGACGTAAGTCGAAGGTATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCG > CP002094/515916‑516067 | agatGACGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTT‑AAAAGGATGGGTTAG‑CTT‑CGGCGAAGCTCAGAATTGAAGCCCCAGTAAACggcggc < 2:960080/96‑1 (MQ=0)agatGACGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTT‑AAAAGGATGGGTTAG‑C‑TTCGGCGAAGCTCAGAATTGAAGCCCCAGTAAACggcggc < 1:409671/96‑1 (MQ=0)agatGACGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTT‑AAAAGGATGGGTTAG‑C‑TTCGGCGAAGCTCAGAATTGAAGCCCCAGTAAACggcggc < 2:343193/96‑1 (MQ=0)agatGACGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTT‑AAAAGGATGGGTTAG‑C‑TTCGGCGAAGCTCAGAATTGAAGCCCCAGTAAACggcggc < 2:352686/96‑1 (MQ=0) ggcgATGTATAGGGGGTGACGCCTGCCCGGTGCTGGAAGGTT‑AAGAGGAGTGCTTAGACGTAAGTCGAAGGTATGAATTGAAGCCCCAGTAAAcggcgg > 2:793016/4‑99 (MQ=1) tgcataGGGGGTGGCGCCTGCCCGGTGCTGGCAGGTT‑ATGACGAGTGCTTCGACGTAAGTCGAAGGTCTGAATTGAAGGCCCAGTAAACGGCGGCGGTa > 2:663690/4‑99 (MQ=1) ggctGACGCCTGCCCGGTGCTGGAAGGTT‑AAAAGGATGGGTTAG‑C‑TTCGGCGAAGCTCAGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACgg > 2:956055/4‑99 (MQ=0) cgacTGCCCGGTGCTGGAAGGAT‑AAGAGGAGTGCTTAGACGTAAGTCGAAGGGATGAATTGAAGCCCCAGTAAACGGCGGACGTAACTATAACGGTCCt > 2:914331/4‑99 (MQ=1) ccgggTGCTGGAAGGTT‑AAGGGGAGTGCTGAGACGTAAGTCGAAGGTATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTa < 1:645072/96‑1 (MQ=0) ggggaGGTTAAAGGGGGGTGTTTAGACGAAAGTCGAAGGTATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAAt < 1:858313/95‑1 (MQ=1) ctcaGACGTAAGTCGAAGGTATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTTCTTCTCGGGGAAGTTCCg > 2:462048/4‑99 (MQ=1) | AGGTGATGTATAGGGGGTGACGCCTGCCCGGTGCTGGAAGGTT‑AAGAGGAGTGCTTAGACGTAAGTCGAAGGTATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCG > CP002094/515916‑516067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |