| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP002094 | 515,987 | 0 | G | C | 41.7% | ‑4.7 / 14.5 | 12 | noncoding (1883/2901 nt) | LLNZ_r13413 | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base G (4/3); new base C (1/4); total (5/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.39e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGGTGATGTATAGGGGGTGACGCCTGCCCGGTGCTGGAAGGTT‑AAGAGGAGTGCTTAGACGTAAGTCGAAGG‑TATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCA > CP002094/515916‑516074 | agatGACGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTT‑AAAAGGATGGGTTAG‑CTT‑CGGCGAAGC‑TCAGAATTGAAGCCCCAGTAAACggcggc < 2:960080/96‑1 (MQ=0)agatGACGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTT‑AAAAGGATGGGTTAG‑C‑TTCGGCGAAGC‑TCAGAATTGAAGCCCCAGTAAACggcggc < 1:409671/96‑1 (MQ=0)agatGACGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTT‑AAAAGGATGGGTTAG‑C‑TTCGGCGAAGC‑TCAGAATTGAAGCCCCAGTAAACggcggc < 2:343193/96‑1 (MQ=0)agatGACGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTT‑AAAAGGATGGGTTAG‑C‑TTCGGCGAAGC‑TCAGAATTGAAGCCCCAGTAAACggcggc < 2:352686/96‑1 (MQ=0) ggcgATGTATAGGGGGTGACGCCTGCCCGGTGCTGGAAGGTT‑AAGAGGAGTGCTTAGACGTAAGTCGAAGG‑TATGAATTGAAGCCCCAGTAAAcggcgg > 2:793016/4‑99 (MQ=1) tgcataGGGGGTGGCGCCTGCCCGGTGCTGGCAGGTT‑ATGACGAGTGCTTCGACGTAAGTCGAAGG‑TCTGAATTGAAGGCCCAGTAAACGGCGGCGGTa > 2:663690/4‑99 (MQ=1) ggctGACGCCTGCCCGGTGCTGGAAGGTT‑AAAAGGATGGGTTAG‑C‑TTCGGCGAAGC‑TCAGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACgg > 2:956055/4‑99 (MQ=0) cgacTGCCCGGTGCTGGAAGGAT‑AAGAGGAGTGCTTAGACGTAAGTCGAAGG‑GATGAATTGAAGCCCCAGTAAACGGCGGACGTAACTATAACGGTCCt > 2:914331/4‑99 (MQ=1) ccgggTGCTGGAAGGTT‑AAGGGGAGTGCTGAGACGTAAGTCGAAGG‑TATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTa < 1:645072/96‑1 (MQ=0) ggggaGGTTAAAGGGGGGTGTTTAGACGAAAGTCGAAGG‑TATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAAt < 1:858313/95‑1 (MQ=1) ctcaGACGTAAGTCGAAGG‑TATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTTCTTCTCGGGGAAGTTCCg > 2:462048/4‑99 (MQ=1) aaaatCGAAGGTTATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTTTAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCa < 1:782315/95‑1 (MQ=1) | AGGTGATGTATAGGGGGTGACGCCTGCCCGGTGCTGGAAGGTT‑AAGAGGAGTGCTTAGACGTAAGTCGAAGG‑TATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCA > CP002094/515916‑516074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |