Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_017635	1636298	1636319	22	2 [1]	[1] 2	ECW_RS08125	RHS element core protein

GAAAGCGCCTTCTGATATCCGCTTACAGCTACGTGATGACGGACTGATACTCAACGAC  >  NC_017635/1636248‑1636305                                                  |         gAAAGCGCCTTCTGATATCCGCTTACAGCTACGTGATGACGGACTGATAc          <  1:1293753/50‑1 (MQ=255)          ttCTGATATCCGCTTACAGCTACGTGATGACGGACTGATACTCAACGAc  >  2:185345/1‑49 (MQ=255)                                                  |         GAAAGCGCCTTCTGATATCCGCTTACAGCTACGTGATGACGGACTGATACTCAACGAC  >  NC_017635/1636248‑1636305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑