Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_017635	3123951	3123958	8	2 [1]	[0] 2	tssA	type VI secretion system protein TssA

GCGCACCGAGTCACGCAACCAGCTTAAGCGGCTGTATGCGCAGCAGAACT  >  NC_017635/3123959‑3124008 |                                                  gcgcACCGAGTCACGCAACCAGCTTAAGCGGCTGTATGCGCAGCAGAACt  <  1:1661596/50‑1 (MQ=38) gcgcACCGAGTCACGCAACCAGCTTAAGCGGCTGTATGCGCAGCAGAACt  >  1:901995/1‑50 (MQ=38) |                                                  GCGCACCGAGTCACGCAACCAGCTTAAGCGGCTGTATGCGCAGCAGAACT  >  NC_017635/3123959‑3124008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑