| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_017635 | 3,127,334 | 0 | C | T | 50.0% | ‑3.8 / 14.8 | 14 | pseudogene (650/1425 nt) | tssA | type VI secretion system protein TssA |
| Reads supporting (aligned to +/- strand): ref base C (3/4); new base T (4/3); total (7/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.65e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACACAGTGCATGAACTGCCGCCGGATGTGGACGGCAAAACCCGGCTGGCCCCGCCGCGCACCGAGTCACGCAACCAGCTTAAGCGGCTGTATGCCC > NC_017635/3127286‑3127381 | acacAGTGCATGAACTGCCGCCGGATGTGGACGGCAAAACCCGGCTGGcc < 2:928462/50‑1 (MQ=255)acacAGTGCATGAACTGCCGCCGGATGTGGACGGCAAAACCCGGCTGGcc > 2:24672/1‑50 (MQ=255) cacaGTGCATGAACTGCCGCCGGATGTGGACGGCAAAACCCGGCTGGccc < 1:1047623/50‑1 (MQ=40) ggTGCATGAACTGCCGCCGGATGTGGACGGCAAAACCCGGCTGGTCccgc > 2:141918/2‑50 (MQ=255) aGTGCATGAACTGCCGCCGGATGTGGACGGCAAAACCCGGCTGGCCccgc > 2:385395/1‑50 (MQ=40) gCATGAACTGCCGCCGGATGTGGACGGCAAAACCCGGCTGGTCCcgccgc > 2:1493729/1‑50 (MQ=255) accTGCCGCCGGATGTGGCCGGCAAACCCCGGCTGGTCCCGCCGCGCAcc < 2:1240028/48‑1 (MQ=11) tgtgGCCGCAAAATCCGGGCGGGCCCCGCCGCGCACCGAGTCACGCAAcc < 2:292293/50‑1 (MQ=9) gtgGACGGAAAACCCCGGCTGGCCCCGCCGCGCACCGAGTCACGCAAcc < 2:1383937/49‑1 (MQ=14) ggCAAAACCCGGCTGGTCCCGCCGCGCACCGAGTCACGCAATCAGCtt > 1:1354080/1‑48 (MQ=11) ggCAAAACCCGGCTGGCCCCGCCGCGCACCGAGTCACGCAACCAGCtt > 1:1641102/1‑48 (MQ=255) cAAACCCCGGCTGGTCCCGCCGCGCACCGAGTCACGCAATCAGCTTAAGc < 2:660221/50‑1 (MQ=11) ccGGCTGGTCCCGCCGCGCACCGAGTCACGCAATCAGCTTAAGCGGCTGt < 1:1861157/50‑1 (MQ=11) ggCTGGCCCCGCCGCGCACCGAGTCACGCAACCAGCTTAAGCGGCTGTAt > 2:1977218/1‑50 (MQ=255) cTGGTCCCGCCGCGCACCGAGTCACGCAATCAGCTTAAGCGGCTGTATGc > 1:1446135/1‑50 (MQ=11) cTGGCCCCGCCGCGCACCGAGTCACGCAATCAGCTTAAGCGGCTGTATGc < 2:794644/50‑1 (MQ=255) ggCCCCGCCGCGCACCGAGTCACGCAACCAGCTTAAGCGGCTGTATGcgc < 2:633960/50‑3 (MQ=17) | ACACAGTGCATGAACTGCCGCCGGATGTGGACGGCAAAACCCGGCTGGCCCCGCCGCGCACCGAGTCACGCAACCAGCTTAAGCGGCTGTATGCCC > NC_017635/3127286‑3127381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |