| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_017635 | 3,419,148 | 0 | C | T | 26.2% | 95.7 / 15.1 | 42 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base C (4/27); new base T (11/0); total (15/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.19e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAG > NC_017635/3419099‑3419196 | aaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTc < 2:2054577/50‑1 (MQ=255) aaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCa < 2:786572/50‑1 (MQ=255) aaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGAGAAATTTTTcc > 2:1691426/1‑50 (MQ=38) aaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAg < 1:719587/50‑1 (MQ=255) atatAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTccga > 1:411343/1‑48 (MQ=38) atatAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTTCAg > 1:799176/1‑49 (MQ=255) atatAAAACCACATTTTTAGTGGTAGTTTGTGGCGGAG‑AAATTTTTCAGa > 2:1642578/1‑50 (MQ=38) tataAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGAc < 2:1510728/50‑1 (MQ=255) ataAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTTCAGAc > 1:330619/1‑49 (MQ=255) taAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑GATTTTTTCAGACa > 1:1924491/1‑49 (MQ=38) aaaaCCACATTTTTAGTGGTAGTTTGTGGCGGGG‑AATTTTTTCAGACaa > 2:644533/1‑49 (MQ=38) aaaCCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTTCAGACaaa > 2:1918104/1‑49 (MQ=255) aaCCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTTCAGACaaaa > 1:384629/1‑48 (MQ=255) cacaTTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACaa < 1:216750/50‑1 (MQ=255) acaTTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTTCTGACAAAAACaa > 1:2052985/1‑49 (MQ=38) tttttAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAAc < 2:1701947/50‑1 (MQ=255) ttttAGTGGTAGTTTGTGGCGGTG‑GATTTTTTCCGACAaaaaaaaaaa > 2:1087219/1‑48 (MQ=25) ttAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTg < 2:1831646/49‑1 (MQ=255) tAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTgg < 2:1374345/49‑1 (MQ=255) aGTGGTAGTTTGTGGCGGTG‑AATTTTTTCCGAAAAAAACAAAAACTgggg > 1:1001872/1‑48 (MQ=255) aGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGa < 2:1995844/49‑1 (MQ=255) ggTAGTTTGTGGCGGTG‑AATTTTTTCAGACAAAAACAAAAAAAGGAGTTg > 1:932621/1‑50 (MQ=255) gTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCat < 1:955076/50‑1 (MQ=255) tttGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatg < 2:183092/50‑1 (MQ=255) tttGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatg < 2:30102/50‑1 (MQ=255) tttGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatg < 2:970388/50‑1 (MQ=255) tgtgGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatga < 1:983295/49‑1 (MQ=255) tgtgGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatga < 1:264208/49‑1 (MQ=255) tgGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatgatg < 2:1728749/49‑1 (MQ=255) tgGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatgatg < 1:1819028/49‑1 (MQ=255) tgGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatgat > 2:1590504/1‑48 (MQ=255) tgGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCAtgatga < 1:317642/50‑1 (MQ=255) gCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGc < 1:2068931/50‑1 (MQ=255) cGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCg < 2:1663936/50‑1 (MQ=255) cGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCg < 1:5858/50‑1 (MQ=255) gTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGaa < 1:1996796/50‑1 (MQ=255) gTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGaa < 2:64251/50‑1 (MQ=255) gTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGa > 1:455938/1‑49 (MQ=255) aaTTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAg < 2:915574/49‑1 (MQ=255) tttttCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGtaa < 2:58026/50‑1 (MQ=255) ttttCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGtaa > 2:346892/1‑49 (MQ=255) ttCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGtaata < 2:1420594/49‑1 (MQ=255) ttCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGtaat > 2:1717937/1‑48 (MQ=255) tCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGtaataa < 2:299584/49‑1 (MQ=255) tCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGtaataa < 2:1920774/49‑1 (MQ=255) ccAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAg > 1:1721994/1‑49 (MQ=255) ccAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAg < 1:1160851/49‑1 (MQ=255) | AAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTG‑AATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAG > NC_017635/3419099‑3419196 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |