BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_017635	1,867,117	T→A	intergenic (‑6/‑195)	slyA ← / → ydhI	transcriptional regulator SlyA/DUF1656 domain‑containing protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_017635	1,867,117	0	T	A	100.0%	199.3 / NA	52	intergenic (‑6/‑195)	slyA/ydhI	transcriptional regulator SlyA/DUF1656 domain‑containing protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (29/23); total (29/23)

CGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAA  >  NC_017635/1867071‑1867160

cgcACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAact                                           <  1:1488023/49‑1 (MQ=255)

 gcACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTcc                                         >  2:913004/1‑50 (MQ=255)

 gcACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTcc                                         >  2:899308/1‑50 (MQ=255)

  cACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCt                                        <  2:1623668/50‑1 (MQ=255)

   aCCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCtt                                       <  2:1053923/50‑1 (MQ=255)

   aCCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCtt                                       <  2:1358311/50‑1 (MQ=255)

    ccAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTta                                      <  1:819009/50‑1 (MQ=255)

     cAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTtat                                     <  2:114998/50‑1 (MQ=255)

      aaCCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTtata                                    <  2:502033/50‑1 (MQ=255)

      aaCCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTtat                                     >  1:1934868/1‑49 (MQ=255)

       aCCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTTATaa                                   <  2:206819/50‑1 (MQ=255)

        ccGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTTATAAt                                  <  1:1062490/50‑1 (MQ=255)

         cGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTTATAAtt                                 <  2:298449/50‑1 (MQ=255)

          gTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTTATAAt                                  >  1:1296725/1‑48 (MQ=255)

           tGCCAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTTATAATTAg                               <  1:508663/50‑1 (MQ=255)

             ccAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCt                             >  2:2020155/1‑50 (MQ=255)

              cAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCtt                            >  1:2020023/1‑50 (MQ=255)

              cAGATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCtt                            <  2:541835/50‑1 (MQ=255)

                gATCAGAACCTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGc                          >  2:1693707/1‑50 (MQ=255)

                    aGAACCTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCt                         >  2:1608490/1‑47 (MQ=255)

                    aGAACCTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTaa                       <  2:1077511/49‑1 (MQ=255)

                    aGAACCTAGTGGCGATTCCAATTTCAACTCAGGAAAATTAGCTTgaa                         >  2:1216220/1‑45 (MQ=255)

                      aaCCTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGa                     >  1:1612684/1‑49 (MQ=255)

                      aaCCTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGa                     >  1:1370230/1‑49 (MQ=255)

                        ccTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGatat                  >  1:1724485/1‑50 (MQ=255)

                         cTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGatat                  >  2:1684636/1‑49 (MQ=255)

                         cTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGatat                  >  1:135106/1‑49 (MQ=255)

                         cTAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGAtatt                 <  2:2029005/50‑1 (MQ=255)

                          tAGTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGAtatta                >  2:274569/1‑50 (MQ=255)

                           aGTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGAtattat               >  1:290863/1‑50 (MQ=255)

                            gTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGAtattat               <  2:1032681/49‑1 (MQ=255)

                            gTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATg              <  1:1908556/50‑1 (MQ=255)

                            gTGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATg              <  1:586432/50‑1 (MQ=255)

                             tGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGc             <  1:1089005/50‑1 (MQ=255)

                             tGGCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGc             >  2:1904269/1‑50 (MQ=255)

                              ggCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCg            >  2:1645971/1‑50 (MQ=255)

                               gCGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCgg           <  1:1241325/50‑1 (MQ=255)

                                cGATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGc          <  1:750958/50‑1 (MQ=255)

                                 gATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCt         >  1:2056090/1‑50 (MQ=255)

                                 gATTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCt         >  1:1315549/1‑50 (MQ=255)

                                  aTTCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCtt        >  1:807225/1‑50 (MQ=255)

                                    tCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCttt       >  1:683706/1‑49 (MQ=255)

                                    tCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCttt       >  2:76747/1‑49 (MQ=255)

                                    tCCAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCttt       >  2:546299/1‑49 (MQ=255)

                                     ccAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCttt       >  2:1964079/1‑48 (MQ=255)

                                     ccAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCttt       >  1:1124811/1‑48 (MQ=255)

                                      cAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCttt       >  1:718127/1‑47 (MQ=255)

                                      cAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTa     <  2:1460635/49‑1 (MQ=255)

                                      cAATTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTa     <  2:904626/49‑1 (MQ=255)

                                       aaTTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGa   <  1:987912/50‑1 (MQ=255)

                                        aTTTCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGaa  <  1:1171436/50‑1 (MQ=255)

                                          ttCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGaa  >  2:753482/1‑48 (MQ=255)

                                          ttCAACTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGaa  >  1:1354523/1‑48 (MQ=255)

CGCACCAACCGTGCCAGATCAGAACCTAGTGGCGATTCCAATTTCATCTCCTTATAATTAGCTTGCTAAGATATTATGCGGCTTTTAGAA  >  NC_017635/1867071‑1867160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`