Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_017635	2,312,962	T→C	G139G (GGA→GGG)	ECW_RS11560 ←	phage tail sheath protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_017635	2,312,962	0	T	C	100.0%	24.7 / NA	18	G139G (GGA→GGG)	ECW_RS11560	phage tail sheath protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (11/7);  total (11/7)

ACTGATGCCAGTGCAACAGCCACCTCTTTGGTATCCAGTCCCGGCACGCCGAGAATACGCGGTTTAACACCGGTTACCGACT  >  NC_017635/2312924‑2313005                                       |                                            aCTGATGCCAGTGCAACAGCCACCTCTTTGGTATCCAGCCCCGGCAcac                                   >  1:1217846/1‑47 (MQ=11)  cTGATGCCAGTGCAACAGCCACCTCTTTGGTATCCAGCCCCGGCACAcc                                  >  2:687820/1‑49 (MQ=11)   tGATGCCAGTGCAACAGCCACCTCTTTGGTATCCAGCCCCGGCACAcc                                  >  1:489362/1‑48 (MQ=11)        ccAGTGCAACAGCCACCTCTTTGGTATCCAGCCCCGGCACACCAAGAAt                            <  1:1755133/49‑1 (MQ=11)                aCAGCCACCTCTTTGGTATCCAGCCCCGGCACACCAAGAATACGCGGtt                    >  1:424003/1‑49 (MQ=11)                  aGCCACCTCTTTGGTATCCAGCCCCGGCACACCAAGAATACGCGGTTTaa                 >  1:1610065/1‑50 (MQ=11)                  aGCCACCTCTTTGGTATCCAGCCCCGGCACACCAAGAATACGCGGTTTaa                 >  2:313821/1‑50 (MQ=11)                     cACCTCTTTGGTATCCAGCCCCGGCACACCAAGAATACGCGGTTTAacac              >  2:1655002/1‑50 (MQ=11)                      aCCTCTTTGGTATCCAGCCCCGGCACACCAAGAATACGCGGTTTAACAcc             <  2:980621/50‑1 (MQ=11)                      aCCTCTTTGGTATCCAGCCCCGGCACACCAAGAATACGCGGTTTAACAcc             <  2:1937795/50‑1 (MQ=11)                      aCCTCTTTGGTATCCAGCCCCGGCACACCAAGAATACGCGGTTTAACAcc             <  1:747575/50‑1 (MQ=11)                      aCCTCTTTGGTATCCAGCCCCGGCACACCAAGAATACGCGGTTTAACAcc             <  1:564634/50‑1 (MQ=11)                          ctTTGGTATCCAGCCCCGGCACACCAAGAATACGCGGTTTAACACCGGt          >  1:2053110/1‑49 (MQ=11)                             tGGTATCCAGCCCCGGCACACCAAGAATACGCGGTTTAACACCGGTTAcc      >  1:1149883/1‑50 (MQ=11)                              ggTATCCAGCCCCGGCACACCAAGAATACGCGGTTTAACACCGGTTAcc      <  2:1153857/49‑1 (MQ=11)                               gTATCCAGCCCCGGCACACCAAGAATACGCGGTTTAACACCGGTTACCg     <  1:679295/49‑1 (MQ=11)                                tATCCAGCCCCTGCACACCAAGAATACGCGGTTTAACACCGGTTACCGAc   >  2:1206768/1‑50 (MQ=11)                                 aTCCAGCCCCGGCACACCAAGAATACGCGGTTTAACACCGGTTACCGAct  >  1:323762/1‑50 (MQ=11)                                       |                                            ACTGATGCCAGTGCAACAGCCACCTCTTTGGTATCCAGTCCCGGCACGCCGAGAATACGCGGTTTAACACCGGTTACCGACT  >  NC_017635/2312924‑2313005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑