| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_017635 | 2,322,732 | T→C | intergenic (‑40/+60) | ECW_RS11650 ← / ← ECW_RS11655 | head completion/stabilization protein/terminase endonuclease subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_017635 | 2,322,732 | 0 | T | C | 100.0% | 65.0 / NA | 23 | intergenic (‑40/+60) | ECW_RS11650/ECW_RS11655 | head completion/stabilization protein/terminase endonuclease subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (13/10); total (13/10) | |||||||||||
ATCATGACTACCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGTGTCAGGTGATTCACCGTCACTGACCGGCGTGCCGCCCTGGCGCGG > NC_017635/2322688‑2322777 | atcatGACTACCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAg < 2:579919/50‑1 (MQ=255) atGACTACCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGt < 2:1069303/49‑1 (MQ=255) tGACTACCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGa > 1:1285943/1‑50 (MQ=255) aCTACCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGAtt > 1:1842801/1‑50 (MQ=255) cTACCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTc < 1:1959481/50‑1 (MQ=255) aCCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCAc > 1:1576442/1‑50 (MQ=255) aCCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCAc > 1:1631056/1‑50 (MQ=255) aCCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCAc > 2:616601/1‑50 (MQ=255) aCCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCAc > 2:364395/1‑50 (MQ=255) aCCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCAc > 2:1971298/1‑50 (MQ=255) ccTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCa < 2:336428/48‑1 (MQ=255) ccTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCAcc < 1:1447856/50‑1 (MQ=255) ccTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCAcc > 1:946022/1‑50 (MQ=255) gAAAAGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCACCCTCAc > 1:1329206/1‑50 (MQ=11) aaaaGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCACCCTCa < 2:634493/48‑1 (MQ=11) aaaaGTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCACCCTCa < 1:39167/48‑1 (MQ=11) aGTCCGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCACCCTCACTGAc > 1:2039178/1‑50 (MQ=11) gTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCACCCTCACTGAcc < 2:2064906/50‑1 (MQ=11) gTCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCACCCTCACTGAcc > 1:1967962/1‑50 (MQ=11) tCGGGCGGTGGACGCCGGTACAGCGTCAGGTGATTCACCCTCACTGACCg < 1:573292/50‑1 (MQ=11) gggCGGTGGACGCCGGTACAGCGTCAGGTGATTCACCCTCACTGACCgg < 1:1789949/49‑1 (MQ=11) ggTACAGCGTCAGGTGATTCACCCTCACTGACCGGCGTGCCGCCCTGgcg > 2:569180/1‑50 (MQ=11) aCAGCGTCAGGTGATTCACCCTCACTGACCGGCGTGCCGCCCTGgcgctg > 1:333615/1‑48 (MQ=11) | ATCATGACTACCTCTGAAAAGTCGGGCGGTGGACGCCGGTACAGTGTCAGGTGATTCACCGTCACTGACCGGCGTGCCGCCCTGGCGCGG > NC_017635/2322688‑2322777 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |