| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_017635 | 3,110,650 | C→T | F27F (TTC→TTT) | vgrG → | type VI secretion system tip protein VgrG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_017635 | 3,110,650 | 0 | C | T | 100.0% | 17.2 / NA | 10 | F27F (TTC→TTT) | vgrG | type VI secretion system tip protein VgrG |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (2/8); total (2/8) | |||||||||||
AAGCTCAAAATTCGCGGCCAGCAAAGTCCGGTGGATGTGCTGACCTTCGAAGGCCGCGAACAACTGAGTACCCCGTTCCGCTACGATATCCAG > NC_017635/3110603‑3110695 | aaGCTCAAAATTCGCGGCCAGCAAAGTCCGGTGGATGTGCTGACCTTTGa < 2:133703/50‑1 (MQ=255) cTCAAAATTCGCGGCCAGCAAAGTCCGGTGGATGTGCTGACCTTTGAAgg < 2:578241/50‑1 (MQ=255) cTCAAAATTCGCGGCCAGCAAAGTCCGGTGGATGTGCTGACATTTGAAgg < 2:694513/50‑1 (MQ=14) cgcgGCCAGCAAAGTCCGGTGGATGTGCTGACCTTTGAAGGCCGCGagc < 1:515340/49‑3 (MQ=11) gcgGCCAGCAAAGTCCGGTGGATGTGCTGACCTTTGAAGGCCGCGagca < 2:352913/49‑1 (MQ=11) gCCAGCAAAGTCCGGTGGATGTGCTGACCTTTGAAGGCCGCGAGCAACTg < 2:630568/50‑1 (MQ=11) aGCAAAGTCCGGTGGATGTGCTGACCTTTGAAGGCCGCGAGCAACTGAg > 2:928805/1‑49 (MQ=11) gACCTTTGAAGGCCGCGAGCAACTGAGTACCCCGTTCCGCTACGATATc > 2:518510/1‑49 (MQ=14) aCCTTTGAAGGCCGCGAGCAACTGAGTACCCCGTTCCGCTACGATATcc < 2:1216163/49‑1 (MQ=14) ccTTTGAAGGCCGCGAGCAACTTAGTACCCCGTTCCGCTACGATATCCAg < 1:1462026/50‑1 (MQ=17) | AAGCTCAAAATTCGCGGCCAGCAAAGTCCGGTGGATGTGCTGACCTTCGAAGGCCGCGAACAACTGAGTACCCCGTTCCGCTACGATATCCAG > NC_017635/3110603‑3110695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |