| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_017635 | 3,110,662 | A→G | E31E (GAA→GAG) | vgrG → | type VI secretion system tip protein VgrG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_017635 | 3,110,662 | 0 | A | G | 100.0% | 13.6 / NA | 8 | E31E (GAA→GAG) | vgrG | type VI secretion system tip protein VgrG |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (3/5); total (3/5) | |||||||||||
GCGGCCAGCAAAGTCCGGTGGATGTGCTGACCTTCGAAGGCCGCGAACAACTGAGTACCCCGTTCCGCTACGATATCCAGTTTACCAGTAC > NC_017635/3110616‑3110706 | gcgGCCAGCAAAGTCCGGTGGATGTGCTGACCTTTGAAGGCCGCGagca < 2:352913/49‑1 (MQ=11) gCCAGCAAAGTCCGGTGGATGTGCTGACCTTTGAAGGCCGCGAGCAACTg < 2:630568/50‑1 (MQ=11) aGCAAAGTCCGGTGGATGTGCTGACCTTTGAAGGCCGCGAGCAACTGAg > 2:928805/1‑49 (MQ=11) gACCTTTGAAGGCCGCGAGCAACTGAGTACCCCGTTCCGCTACGATATc > 2:518510/1‑49 (MQ=14) aCCTTTGAAGGCCGCGAGCAACTGAGTACCCCGTTCCGCTACGATATcc < 2:1216163/49‑1 (MQ=14) ccTTTGAAGGCCGCGAGCAACTTAGTACCCCGTTCCGCTACGATATCCAg < 1:1462026/50‑1 (MQ=17) tgAAGTCCGCGAGCAACTGAGTACCCCGTTCCGCTACGATATCCAGTTTa > 2:1286186/2‑50 (MQ=17) ccGCGAGCAACTGAGTACCCCGTTCCGCTACGATATCCAGTTTACCAGTa < 2:277143/50‑1 (MQ=255) cgcgAGCAACTGAGTACCCCGTTCCGCTACGATATCCAGTTTACCAGTAc < 1:27030/50‑1 (MQ=255) | GCGGCCAGCAAAGTCCGGTGGATGTGCTGACCTTCGAAGGCCGCGAACAACTGAGTACCCCGTTCCGCTACGATATCCAGTTTACCAGTAC > NC_017635/3110616‑3110706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |