| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_017635 | 4,345,676 | C→A | pseudogene (540/854 nt) | ECW_RS21695 → | GPO family capsid scaffolding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_017635 | 4,345,676 | 0 | C | A | 100.0% | 12.2 / NA | 6 | pseudogene (540/854 nt) | ECW_RS21695 | GPO family capsid scaffolding protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (4/2); total (4/2) | |||||||||||
CGCCGGTTGAGCTGGAATTTGAAGACCTGCCTGAAACCGTGTTCACCGCCCTGA > NC_017635/4345630‑4345683 | cGCCGGTTGAGCTGGAATTTGAAGACCTGCCTGAAACCGTGTTCACAGcc > 1:1472961/1‑50 (MQ=255)cGCCGGTTGAGCTGGAATTTGAAGACCTGCCTGAAACCGTGTTCACAGcc < 2:233440/50‑1 (MQ=255) ccGGTTGAGCTGGAATTTGAAGACCTGCCTGAAACCGTGTTCACAGCCCt < 2:176262/50‑1 (MQ=255) cGGTTGAGCTGGAATTTGAAGACCTGCCTGAAACCGTGTTCACAGCCCt > 1:335208/1‑49 (MQ=255) ggTTGAGCTGGAATTTGAAGACCTGCCTGAAACCGTGTTCACAGCCCTGa > 2:1221598/1‑50 (MQ=12) ggTTGAGCTGGAATTTGAAGACCTGCCTGAAACCGTGTTCACAGCCCTGa > 2:1945782/1‑50 (MQ=12) | CGCCGGTTGAGCTGGAATTTGAAGACCTGCCTGAAACCGTGTTCACCGCCCTGA > NC_017635/4345630‑4345683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |