Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_017635	1,642,952	T→C	V56V (GTA→GTG)	yddH ←	flavin reductase family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_017635	1,642,952	0	T	C	100.0%	75.2 / NA	20	V56V (GTA→GTG)	yddH	flavin reductase family protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (9/11);  total (9/11)

ATTTACCGTTACGTTCAATCAACTCCCTGGTCCATGTCGATTTATCTACCACAATCGCCACGCGTGGCGGTTCAAACTCCACCGGCATT  >  NC_017635/1642906‑1642994                                               |                                           aTTTACCGTTACGTTCAATCAACTCCCTGGTCCATGTCGATTTATCCAcc                                         <  1:1415332/50‑1 (MQ=255)     aCCGTTACGTTCAATCAACTCCCTGGTCCATGTCGATTTATCCACcaca                                      <  1:216248/49‑1 (MQ=255)      ccGTTACGTTCAATCAACTCCCTGGTCCATGTCGATTTATCCACCACAAt                                    <  1:924678/50‑1 (MQ=255)       cGTTACGTTCAATCAACTCCCTGGTCCATGTCGATTTATCCACCACAATc                                   <  2:426586/50‑1 (MQ=255)       cGTTACGTTCAATCAACTCCCTGGTCCATGTCGATTTATCCACCACAATc                                   >  1:1542127/1‑50 (MQ=255)       cGTTACGTTCAATCAACTCCCTGGTCCATGTCGATTTATCCACCACAATc                                   <  2:1407394/50‑1 (MQ=255)           aCGTTCAATCAACTCCCTGGTCCATGTCGATTTATCCACCACAATCGcc                                <  2:349041/49‑1 (MQ=255)           aCGTTCAATCAACTCCCTGGTCCATGTCGATTTATCCACCACAATCGCCa                               >  1:1334516/1‑50 (MQ=255)           aCGTTCAATCAACTCCCTGGTCCATGTCGATTTATCCACCACAATCGCCa                               >  2:398424/1‑50 (MQ=255)            cGTTCAATCAACTCCCTGGTCCATGTCGATTTATCCACCACAATCGCCAc                              <  2:1424468/50‑1 (MQ=255)            cGTTCAATCAACTCCCTGGTCCATGTCGATTTATCCACCACAATCGCCAc                              >  1:2072041/1‑50 (MQ=255)             gTTCAATCAACTCCCTGGTCCATGTCGATTTATCCACCACAATCGCCAcg                             <  1:375673/50‑1 (MQ=255)                   tcaaCTCCCTGGTCCATGTCGATTTATCCACCACAATCGCCACGCGTGGc                       <  1:89463/50‑1 (MQ=255)                    caaCTCCCTGGTCCATGTCGATTTATCCACCACAATCGCCACGCGTGGCg                      >  1:569132/1‑50 (MQ=255)                      aCTCCCTGGTCCATGTCGATTTATCCACCACAATCGCCACGCGTGGCGGt                    >  2:1545614/1‑50 (MQ=255)                              gTCCATGTCGATTTATCCACCACAATCGCCACGCGTGGCGGTTCAAACTc            >  1:1181344/1‑50 (MQ=255)                                ccATGTCGATTTATCCACCACAATCGCCACGCGTGGCGGTTCAAACTCCa          >  2:1591403/1‑50 (MQ=255)                                 cATGTCGATTTATCCACCACAATCGCCACGCGTGGCGGTTCAAACTCCAc         <  1:1828356/50‑1 (MQ=255)                                  aTGTCGATTTATCCACCACAATCGCCACGCGTGGCGGTTCAAACTCcccc        >  2:55283/1‑50 (MQ=255)                                        aTTTATCCACCACAATCGCCACGCGTGGCGGTTCAAACTCCACCGGCAtt  <  2:1955307/50‑1 (MQ=255)                                               |                                           ATTTACCGTTACGTTCAATCAACTCCCTGGTCCATGTCGATTTATCTACCACAATCGCCACGCGTGGCGGTTCAAACTCCACCGGCATT  >  NC_017635/1642906‑1642994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑