| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_017635 | 3,614,356 | Δ11 bp | coding (1926‑1936/1941 nt) | csrD ← | RNase E specificity factor CsrD |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_017635 | 3614356 | 3614366 | 11 | 40 [0] | [0] 42 | csrD | RNase E specificity factor CsrD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_017635 | = 3614355 | 0 (0.000) | 39 (0.780) | 15/94 | 0.8 | 100% | coding (1937/1941 nt) | csrD | RNase E specificity factor CsrD |
| ? | NC_017635 | 3614367 = | 0 (0.000) | coding (1925/1941 nt) | csrD | RNase E specificity factor CsrD | |||||
CAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_017635/3614310‑3614355‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > NC_017635/3614367‑3614412 CAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATG < 1:1736240/48‑1 CGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGA < 2:1306931/48‑1 CGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAAT < 1:1025688/48‑1 CGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAAT < 2:2119381/48‑1 CGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAAT < 1:1547083/48‑1 CGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAAT < 1:65831/48‑1 CGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAAT < 1:1926404/48‑1 GTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATT < 1:1456788/48‑1 TATTCTACGTGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTT > 1:2014873/1‑48 TGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTA < 1:588061/48‑1 TGAAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTA < 1:488248/48‑1 AAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGT < 2:2425062/48‑1 AAAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAG < 1:1363545/47‑1 AAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTA < 1:575299/48‑1 AAACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTA < 1:2230242/48‑1 AACAGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTAT > 1:107617/1‑48 AGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAA < 2:91224/48‑1 AGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAA < 1:484012/48‑1 AGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAA < 2:880944/48‑1 AGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAA < 1:1989044/48‑1 AGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAA < 2:2548062/48‑1 AGATTAAACGGCAGGTTAAATGTGAATATTTTTTCACGTTAGTATCAA < 1:1287977/48‑1 GTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAC > 1:1525298/1‑48 GTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAC > 2:659551/1‑48 GTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAC > 2:1655629/1‑48 GTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAC > 1:2086364/1‑48 GTTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGAC > 1:2553593/1‑48 TTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACG > 2:1279912/1‑48 TTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACG > 2:1403910/1‑48 TTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACG > 2:1411582/1‑48 TTAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACG > 2:2210621/1‑48 TAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGC > 1:2448687/1‑48 TAAATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGC > 1:2282104/1‑48 ATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > 2:107763/1‑47 ATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > 1:996608/1‑47 ATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > 2:1963400/1‑47 ATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > 1:92214/1‑47 ATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > 1:122093/1‑47 ATGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > 1:1899023/1‑47 CAGCGCGCGTTATTCTACGTGAAAACAGATTAAACGGCAGGTTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_017635/3614310‑3614355‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGA > NC_017635/3614367‑3614412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |