Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3797548	3797934	387	46 [44]	[44] 46	rfaS	LPS core biosynthesis protein RfaS

CTTCTAATATTCTCTTCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTCCCTATAAATCTATGCTCAAAATCATATATA  >  NZ_CP009273/3797833‑3798132                                                                                                       |                                                                                                                                                                                                      cttctAATATTCTCTTCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCAtt                                 >  2:981108/1‑269 (MQ=255) cttctAATATTCTCTTCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCAtt                                 <  1:981108/269‑1 (MQ=255)            ctctTCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACTCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCACATAAACTATAATTTCTAATTTCATCCATTCCTATAGTAAACAATTGTTCTATTTCCTTGATCTTTTCATTCCCTATACATCTATGCTCAAATTCatatatc  >  2:677372/1‑288 (MQ=255)               ttCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCt                                                                                                                                                                                   >  1:12479/1‑109 (MQ=255)               ttCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCt                                                                                                                                                                                   <  2:12479/109‑1 (MQ=255)               ttCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGAcc                                                                                                                                             >  2:913437/1‑147 (MQ=255)               ttCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGAcc                                                                                                                                             <  1:913437/147‑1 (MQ=255)               tgcATAAGATATTTGTTTTTAAATAAAATACTTTGAAGGCGGAGATGATGGCGTATATTTGACAACATTAAAATCAAGCGTACATCCTAGTGTTGTTAATCTCTCGGCt                                                                                                                                                                                   <  1:559507/107‑1 (MQ=255)                    aaGATATTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTCCCTATAAATCTATGCTCa              <  2:1108907/269‑1 (MQ=255)                    aaGATATTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTCCCTATAAATCTATGCTCa              >  1:1108907/1‑269 (MQ=255)                         atTTGTTTTTCAATCAAATCCTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAACTCTAGCTTACATCCTCTTGTTTTTAATCTCTCGCCTAACTCcttca                                                                                                                                                                         >  2:559507/1‑107 (MQ=255)                         atTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGAcc                                                                                                                                             >  2:605268/1‑137 (MQ=255)                         atTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGAcc                                                                                                                                             <  1:605268/137‑1 (MQ=255)                           ttGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCAtt                                 >  1:883515/1‑243 (MQ=255)                           ttGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCAtt                                 <  2:883515/243‑1 (MQ=255)                                tttCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTa                                                                                                                                                                                                       <  2:837779/72‑1 (MQ=255)                                tttCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTa                                                                                                                                                                                                       >  1:837779/1‑72 (MQ=255)                                tttCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCaa                                                                                                                                           <  2:33957/132‑1 (MQ=255)                                tttCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCaa                                                                                                                                           >  1:33957/1‑132 (MQ=255)                                  tcaatcaaATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGt                                                                                                          <  2:294985/163‑1 (MQ=255)                                  tcaatcaaATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGt                                                                                                          >  1:294985/1‑163 (MQ=255)                                   caatcaaATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCt                                                                                                                                                        >  1:1107385/1‑116 (MQ=255)                                   caatcaaATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCt                                                                                                                                                        <  2:1107385/116‑1 (MQ=255)                                                tGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCAtt                                 <  2:425267/222‑1 (MQ=255)                                                tGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCAtt                                 >  1:425267/1‑222 (MQ=255)                                                        tAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGgctggctg                                                                                                                    >  1:1027627/1‑131 (MQ=255)                                                        tAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGgctggctg                                                                                                                    <  2:1027627/131‑1 (MQ=255)                                                                gTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTa                                                    <  1:574179/187‑1 (MQ=255)                                                                   ttATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCAtt                                 <  2:679068/203‑1 (MQ=255)                                                                   ttATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCAtt                                 >  1:679068/1‑203 (MQ=255)                                                                                caTTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATtggct                                                                                                                         >  2:982129/1‑102 (MQ=255)                                                                                caTTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATtggct                                                                                                                         <  1:982129/102‑1 (MQ=255)                                                                                caTTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAg                                                                                                       >  1:756838/1‑120 (MQ=255)                                                                                caTTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAg                                                                                                       <  2:756838/120‑1 (MQ=255)                                                                                caTTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTa                                                    <  2:11454/171‑1 (MQ=255)                                                                                caTTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTa                                                    >  1:11454/1‑171 (MQ=255)                                                                                           aGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATtggct                                                                                                                         <  2:184445/91‑1 (MQ=255)                                                                                           aGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATtggct                                                                                                                         >  1:184445/1‑91 (MQ=255)                                                                                           aGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCa                                   >  1:846661/1‑177 (MQ=255)                                                                                           aGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCa                                   <  2:846661/177‑1 (MQ=255)                                                                                                    ccTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATtggc                                                                                                                          >  2:226696/1‑81 (MQ=255)                                                                                                    ccTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATtggc                                                                                                                          <  1:226696/81‑1 (MQ=255)                                                                                                      tAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTAtaatttctaat                                                                                    >  2:411833/1‑117 (MQ=255)                                                                                                      tAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTAtaatttctaat                                                                                    <  1:411833/117‑1 (MQ=255)                                                                                                       aGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGcc                                               >  2:1034019/1‑153 (MQ=255)                                                                                                       aGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGcc                                               <  1:1034019/153‑1 (MQ=255)                                                                                                       |                                                                                                                                                                                                      CTTCTAATATTCTCTTCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGTCGTAGATGATGTCTTATCTTTGACAACATTAAAATCTAGCTTACATCCTAGTGTTGTTAATCTCTCGGCTAACTCATTAATTATTTGAAGACGCCCTTTATCACGACCAAGGAAAAAACATATTGGCTGGCTGTTATTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTCCCTATAAATCTATGCTCAAAATCATATATA  >  NZ_CP009273/3797833‑3798132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑