mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1972967 = | 0 (0.000) | 69 (0.670) | 29/430 | 3.3 | 100% | intergenic (‑513/‑267) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | 2095230 = | NA (NA) | pseudogene (1/354 nt) | wbbL | N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
| * | ? | NZ_CP009273 | 4532499 = | 12 (0.120) | 10 (0.100) | 10/412 | 7.8 | 30.5% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 34 (0.340) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 2940826 | 35 (0.340) | 3 (0.050) | 3/264 | 8.5 | 11.7% | intergenic (+4/‑30) | BW25113_RS14635/BW25113_RS14640 | tRNA‑Met/tRNA‑Met |
| ? | NZ_CP009273 | 2941047 = | 24 (0.380) | intergenic (+5/+69) | BW25113_RS14645/amiC | tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase AmiC | |||||
| * | ? | NZ_CP009273 | 391213 = | 102 (0.990) | 7 (0.070) | 7/412 | 9.2 | 7.1% | coding (531/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase AmpH |
| ? | NZ_CP009273 | 391301 = | 85 (0.860) | coding (443/1158 nt) | ampH | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase AmpH | |||||
| * | ? | NZ_CP009273 | = 4532507 | 13 (0.130) | 6 (0.060) | 6/412 | 9.7 | 20.5% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 34 (0.340) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 442683 | 108 (1.040) | 4 (0.050) +39 bp |
4/352 | 9.8 | 4.4% | coding (479/891 nt) | cyoE | heme o synthase |
| ? | NZ_CP009273 | 442723 = | 105 (1.010) | coding (439/891 nt) | cyoE | heme o synthase | |||||
| * | ? | NZ_CP009273 | 3939339 = | 178 (1.720) | 5 (0.050) | 5/416 | 10.3 | 2.8% | noncoding (2276/2904 nt) | BW25113_RS19530 | 23S ribosomal RNA |
| ? | NZ_CP009273 | 4033144 = | NA (NA) | noncoding (2266/2905 nt) | BW25113_RS19995 | 23S ribosomal RNA | |||||
| * | ? | NZ_CP009273 | 2269311 = | 75 (0.720) | 5 (0.050) | 5/414 | 10.3 | 6.7% | coding (560/1026 nt) | yejE | ABC transporter permease |
| ? | NZ_CP009273 | 2269347 = | 66 (0.660) | coding (596/1026 nt) | yejE | ABC transporter permease | |||||
| * | ? | NZ_CP009273 | 224503 = | NA (NA) | 5 (0.050) | 5/416 | 10.3 | NA | noncoding (2258/2904 nt) | BW25113_RS01025 | 23S ribosomal RNA |
| ? | NZ_CP009273 | 224528 = | NA (NA) | noncoding (2283/2904 nt) | BW25113_RS01025 | 23S ribosomal RNA | |||||
| * | ? | NZ_CP009273 | = 4601841 | 93 (0.900) | 4 (0.040) | 4/414 | 10.9 | 4.3% | intergenic (+23/‑104) | osmY/ytjA | molecular chaperone OsmY/DUF1328 domain‑containing protein |
| ? | NZ_CP009273 | = 4601847 | 88 (0.880) | intergenic (+29/‑98) | osmY/ytjA | molecular chaperone OsmY/DUF1328 domain‑containing protein | |||||