BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_009004	672,705	T→G	pseudogene (119/138 nt)	LLMG_RS13115 →	transposase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_009004	672,705	0	T	G	99.9%	2628.1 / NA	665	pseudogene (119/138 nt)	LLMG_RS13115	transposase
Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (353/311); minor base A (1/0); total (354/311)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 665 total aligned reads displayed.

GACAAAAACATGCAAAAACGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATTGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTATGACTGGAATT  >  NC_009004/672578‑672849

    aaaaCATGCAAAAAGGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGACAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTGTACTGTAAAGGGcc                                                                                                                          <  1:2089667/148‑1 (MQ=255)

    aaaaCATGCAAAAACGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAAGAATTTATAAATGGATAGACCTCTACTGTAAAGGGcc                                                                                                                          <  1:4234066/148‑1 (MQ=18)

    aaaaCATGCAAAAACGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTGTACTGTAAAGGGcc                                                                                                                          <  1:3688355/148‑1 (MQ=18)

    aaaaCATGCAAAAACGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGcc                                                                                                                          >  1:2224096/1‑148 (MQ=18)

     aaaCATGCAAAAACGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCa                                                                                                                         >  1:9368794/1‑148 (MQ=21)

         aTGCAAAAACGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCt                                                                                                                     >  1:7199158/1‑148 (MQ=38)

             aaaaaCGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTaaaa                                                                                                                 >  1:5727572/1‑148 (MQ=255)

               aaaCGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATg                                                                                                               >  1:10234891/1‑148 (MQ=255)

               aaaCGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATg                                                                                                               >  1:7033187/1‑148 (MQ=255)

               aaaCGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATg                                                                                                               >  1:9687070/1‑148 (MQ=255)

                aaCGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGt                                                                                                              >  1:1221169/1‑148 (MQ=255)

                 aCGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTa                                                                                                             >  1:1399519/1‑148 (MQ=255)

                 aCGCTACTCAAAAGAATATAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTa                                                                                                             >  1:5085433/1‑148 (MQ=255)

                   gCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAgg                                                                                                           >  1:5498774/1‑148 (MQ=255)

                     tACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGaa                                                                                                         <  1:8949666/148‑1 (MQ=255)

                     tACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGaa                                                                                                         <  1:10700935/148‑1 (MQ=255)

                        tCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACg                                                                                                      >  1:7676427/1‑148 (MQ=255)

                         cAAAAGAATTTAAGGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACgg                                                                                                     <  1:1946806/148‑1 (MQ=255)

                          aaaaGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACggg                                                                                                    <  1:10548168/148‑1 (MQ=255)

                          aaaaGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACggg                                                                                                    <  1:4656649/148‑1 (MQ=255)

                           aaaCAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGc                                                                                                   >  1:2445032/1‑148 (MQ=255)

                            aaGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGcc                                                                                                  >  1:112000/1‑148 (MQ=255)

                             aGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCa                                                                                                 <  1:7313257/148‑1 (MQ=255)

                             aGAATTTAAAGAAACCCTTATCCCCTTCAATCATTCGGGCCAACCCGCCACCCAGCTGTTTAAAGAAAATGACGTGGCCCCTGCACCAATTTATAAATGGATAGCCCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGccc                                                                                                 <  1:5646594/148‑2 (MQ=17)

                              gAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCAt                                                                                                >  1:8211334/1‑148 (MQ=255)

                              gAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCAt                                                                                                >  1:7973962/1‑148 (MQ=255)

                              gAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCAt                                                                                                >  1:2032011/1‑148 (MQ=255)

                               aaTTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCAtt                                                                                               >  1:5296745/1‑148 (MQ=255)

                               aaTTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCAtt                                                                                               >  1:11183043/1‑148 (MQ=255)

                                aTTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTg                                                                                              >  1:6328585/1‑148 (MQ=255)

                                 tttAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGa                                                                                             >  1:7445560/1‑148 (MQ=255)

                                      aGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATg                                                                                        >  1:9062322/1‑148 (MQ=255)

                                         aaCCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAg                                                                                     >  1:6466758/1‑148 (MQ=255)

                                           cccTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGt                                                                                   >  1:10064109/1‑148 (MQ=255)

                                           cccTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGt                                                                                   >  1:4873403/1‑148 (MQ=255)

                                               tATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAAc                                                                               >  1:1538945/1‑148 (MQ=255)

                                                aTCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACt                                                                              <  1:2556695/148‑1 (MQ=255)

                                                 tCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACtt                                                                             <  1:8534652/148‑1 (MQ=255)

                                                    ccTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTaa                                                                          >  1:4125628/1‑148 (MQ=255)

                                                            cATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGTCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGa                                                                  >  1:3935598/1‑148 (MQ=255)

                                                             aTTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGAt                                                                 <  1:10841423/148‑1 (MQ=255)

                                                             aTTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGAt                                                                 <  1:87043/148‑1 (MQ=255)

                                                                cTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGTCGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCAAGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAgg                                                              <  1:2761008/148‑1 (MQ=255)

                                                                cTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAgg                                                              >  1:8035182/1‑148 (MQ=255)

                                                                 tGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGc                                                             <  1:3181571/148‑1 (MQ=255)

                                                                  ggTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCt                                                            >  1:11407402/1‑148 (MQ=255)

                                                                  ggTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGGTAACTTTAAAATTGTGATAGGCt                                                            >  1:11326302/1‑148 (MQ=255)

                                                                   gTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCtt                                                           <  1:4555795/148‑1 (MQ=255)

                                                                   gTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCtt                                                           >  1:10415038/1‑148 (MQ=255)

                                                                        tCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCt                                                      >  1:3095295/1‑148 (MQ=255)

                                                                         ccGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCtt                                                     <  1:3348070/148‑1 (MQ=255)

                                                                           gTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTAt                                                   >  1:6555808/1‑148 (MQ=255)

                                                                            tCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATg                                                  <  1:8411512/148‑1 (MQ=255)

                                                                            tCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATg                                                  >  1:3438500/1‑148 (MQ=255)

                                                                            tCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATg                                                  <  1:6168048/148‑1 (MQ=255)

                                                                             cACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATga                                                 <  1:6001161/148‑1 (MQ=255)

                                                                              aCCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATgag                                                <  1:2354934/148‑1 (MQ=255)

                                                                               cccAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATgaga                                               >  1:5217836/1‑148 (MQ=255)

                                                                               cccAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATgaga                                               >  1:9270485/1‑148 (MQ=255)

                                                                                 cAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACATTTTATAAATGGATAGACCTCTACTGTATAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGaaa                                             <  1:3056367/148‑1 (MQ=255)

                                                                                  aGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAGTTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGaaaa                                            <  1:11482375/148‑1 (MQ=255)

                                                                                    cTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGa                                          >  1:8650883/1‑148 (MQ=255)

                                                                                        cTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATc                                      >  1:9434546/1‑148 (MQ=255)

                                                                                         tAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATcc                                     >  1:9608513/1‑148 (MQ=255)

                                                                                          aaaGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCt                                    <  1:6788583/148‑1 (MQ=255)

                                                                                           aaGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTa                                   <  1:544347/148‑1 (MQ=255)

                                                                                           aaGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTa                                   <  1:11693604/148‑1 (MQ=255)

                                                                                           aaGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTa                                   >  1:8154307/1‑148 (MQ=255)

                                                                                            aGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAg                                  <  1:8802117/148‑1 (MQ=255)

                                                                                            aGAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAg                                  >  1:5798469/1‑148 (MQ=255)

                                                                                             gAATATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGa                                 >  1:2678323/1‑148 (MQ=255)

                                                                                              aaTATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGaa                                >  1:6394091/1‑148 (MQ=255)

                                                                                              aaTATGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGaa                                <  1:6664492/148‑1 (MQ=255)

                                                                                                tatGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAg                              <  1:4437983/148‑1 (MQ=255)

                                                                                                tatGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAg                              <  1:7623159/148‑1 (MQ=255)

                                                                                                 atGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGt                             >  1:6068588/1‑148 (MQ=255)

                                                                                                  tGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGACCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGta                            <  1:4923261/148‑1 (MQ=255)

                                                                                                     cGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATaa                         <  1:685988/148‑1 (MQ=255)

                                                                                                     cGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATaa                         <  1:3756440/148‑1 (MQ=255)

                                                                                                           cccTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAAc                   <  1:2900065/148‑1 (MQ=255)

                                                                                                           cccTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAAc                   <  1:9221366/148‑1 (MQ=255)

                                                                                                            ccTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACa                  <  1:755033/148‑1 (MQ=255)

                                                                                                            ccTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACa                  >  1:1320181/1‑148 (MQ=255)

                                                                                                             cTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTACAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACAt                 <  1:1768790/148‑1 (MQ=255)

                                                                                                             cTGCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACAt                 >  1:7808375/1‑148 (MQ=255)

                                                                                                               gCAACAATTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCt               <  1:4710713/148‑1 (MQ=255)

                                                                                                                caacaaTTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCtt              >  1:1597728/1‑148 (MQ=255)

                                                                                                                caacaaTTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCtt              >  1:7130511/1‑148 (MQ=255)

                                                                                                                 aacaaTTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTa             >  1:10000726/1‑148 (MQ=255)

                                                                                                                 aacaaTTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTa             <  1:10926663/148‑1 (MQ=255)

                                                                                                                  acaaTTTATAAATGGATAGACCTCTACTGTAAAGGTCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTAt            <  1:9791997/148‑1 (MQ=255)

                                                                                                                   caaTTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTATg           <  1:7922156/148‑1 (MQ=255)

                                                                                                                   caaTTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTATg           <  1:3543975/148‑1 (MQ=255)

                                                                                                                   caaTTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTATg           >  1:11619488/1‑148 (MQ=255)

                                                                                                                   caaTTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTATg           >  1:11270267/1‑148 (MQ=255)

                                                                                                                    aaTTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTATGa          >  1:4770304/1‑148 (MQ=255)

                                                                                                                     aTTTATAAATGGATAGAGCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTATGAc         <  1:3984430/148‑1 (MQ=255)

                                                                                                                     aTTTATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTATGAc         <  1:10613073/148‑1 (MQ=255)

                                                                                                                       ttATAAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTATGACTg       >  1:1664812/1‑148 (MQ=255)

                                                                                                                         ataAATGGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTATGACTGGa     <  1:5910215/148‑1 (MQ=255)

GACAAAAACATGCAAAAACGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATATGACGTGGCCCCTGCAACAATTTATAAATTGATAGACCTCTACTGTAAAGGGCCATGCTAAAATGTAGGAAACGGGCCATTGAAAATGTAGGTTAACTTTAAAATTGTGATAGGCTTTTCCTTATGAGAAAAGACATCCTAGAAAGTATAACCGAACATCTTATGACTGGAATT  >  NC_009004/672578‑672849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`