| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_009004 | 1,277,684 | T→A | N231I (AAT→ATT) | LLMG_RS06625 ← | Cna B‑type domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_009004 | 1,277,684 | 0 | T | A | 99.8% | 2226.2 / NA | 579 | N231I (AAT→ATT) | LLMG_RS06625 | Cna B‑type domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); major base A (255/322); minor base G (0/1); total (256/323) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 579 total aligned reads displayed.
TGAATTTTGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCATTAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCTTTCAGG > NC_009004/1277539‑1277827 | tGAATTTTGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATa > 1:10001572/1‑148 (MQ=255) gAATTTTGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATaa < 1:3295801/148‑1 (MQ=255) aaTTTTGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATaaa < 1:2669512/148‑1 (MQ=255) aTTTTGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATaaaa < 1:148569/148‑1 (MQ=255) aTTTTGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATaaaa > 1:6654454/1‑148 (MQ=255) ttttGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAg > 1:4960465/1‑148 (MQ=255) tttGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGa < 1:10187303/148‑1 (MQ=255) tttGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGa < 1:9053369/148‑1 (MQ=255) tAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCg < 1:755100/148‑1 (MQ=255) tAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCg > 1:1253241/1‑148 (MQ=255) aaaTTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGaa > 1:9396007/1‑148 (MQ=255) aTTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAg < 1:9517289/148‑1 (MQ=255) aTTTTACCCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTACAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAg < 1:1587362/148‑1 (MQ=255) ttttACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAgg < 1:5159447/148‑1 (MQ=255) tACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCCGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGtt > 1:365817/1‑148 (MQ=255) aCTCGTATCTAACCATGCAGTTTGGCTCCAACCTCCTACAGCAAAACCTGCTTCAGTGGAATAAGTTCCAGTTCGCCCAGAATTTATACGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAGAAGAACCGAAGAGGttt < 1:9537759/148‑1 (MQ=255) cTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAATAGAACCGAAAGGGTTTc < 1:2923782/148‑1 (MQ=255) cTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTc < 1:3086321/148‑1 (MQ=255) cGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCt > 1:10769620/1‑148 (MQ=255) cGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGATGTCGTTGTTGTCTCAATAAAAGAACCGATAGGGTTTCCt > 1:4379112/1‑148 (MQ=255) gTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTa < 1:5087400/148‑1 (MQ=255) aTCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGa < 1:9112474/148‑1 (MQ=255) aTCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGa < 1:7170683/148‑1 (MQ=255) aTCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGa > 1:8035046/1‑148 (MQ=255) tCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGAt > 1:10998106/1‑148 (MQ=255) tCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGAt > 1:1052349/1‑148 (MQ=255) cTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTCGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGAtg > 1:2452427/1‑148 (MQ=255) tAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGAtgt > 1:727321/1‑148 (MQ=255) aaCCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGAtgtg > 1:7368421/1‑148 (MQ=255) aaCCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGAtgtg > 1:8852830/1‑148 (MQ=255) aTGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTGCTAGATGTGCTcc < 1:578069/148‑1 (MQ=255) aTGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTcc > 1:5916696/1‑148 (MQ=255) aTGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTcc < 1:6929705/148‑1 (MQ=255) tGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCt > 1:10444614/1‑148 (MQ=255) cAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGGTTCCTAGATGTGCTCCttt < 1:5510905/148‑1 (MQ=255) aaTTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTa < 1:4686058/148‑1 (MQ=255) aaTTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTa > 1:8689423/1‑148 (MQ=255) aaTTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTa < 1:399625/148‑1 (MQ=255) aTTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTAt > 1:10036662/1‑148 (MQ=255) ttGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCCCCTTTAttt < 1:409436/148‑1 (MQ=255) tGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTAtttt < 1:10265039/148‑1 (MQ=255) ggCCCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTc < 1:4244106/148‑1 (MQ=255) gCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCa > 1:9224513/1‑148 (MQ=255) gCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCa < 1:4444637/148‑1 (MQ=255) cTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAg < 1:6779458/148‑1 (MQ=255) tCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAgg > 1:2798474/1‑148 (MQ=255) aaTCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTc < 1:1667393/148‑1 (MQ=255) aTCTCCTACACCAAACCCAGCTTCAGTGGAAAAATTTACTGTTCCCCAAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCt < 1:3149645/148‑1 (MQ=255) ctcCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTAt < 1:10671435/148‑1 (MQ=255) ctcCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTAt < 1:1899331/148‑1 (MQ=255) tACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGATAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTcc < 1:5821583/148‑1 (MQ=255) aGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAg > 1:4157926/1‑148 (MQ=255) cAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGcc > 1:10368676/1‑148 (MQ=255) cAAAACCTGCTTCAAAGGATAAAGTTACTGGTCGCCCAGAATTTAAAACCGGACTATTAGCTGCGTTCGGTCTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCCTTATTTTCAGGGTCTATTTCCCAGcc > 1:2026390/1‑148 (MQ=255) aaaCCTGCTTCAGTGGAAAAAGTTCCTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTa < 1:11282203/148‑1 (MQ=255) aaaCCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGCTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTa > 1:9893570/1‑148 (MQ=255) aaCCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTaa < 1:4794162/148‑1 (MQ=255) aaCCTGCTACAGTGGAAAATGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTaa < 1:3482845/148‑1 (MQ=255) aCCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAAt > 1:11695446/1‑148 (MQ=255) aCCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAAt > 1:1360518/1‑148 (MQ=255) cTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCt < 1:2381320/148‑1 (MQ=255) gCTTCAGTGGAGAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTAt < 1:3409658/148‑1 (MQ=255) cAGTGGAAAAAGTTATTGTTCGCCCAGAATTTCAAAGGGGACTTTTAGCTGCGGTCGGTGTCGTTGTTGTCCCAATAAAAGAACCGAAAGGGTTTCCTAGGTGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGaac < 1:8903382/148‑3 (MQ=255) gAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTatcat < 1:9153780/148‑1 (MQ=255) aaaaaGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTatcatc > 1:5617598/1‑148 (MQ=255) aaaaGTTACTGTTCGCCCAGAATTTAACAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTatcatca < 1:3746653/148‑1 (MQ=255) aaGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTatcatcatc < 1:2544615/148‑1 (MQ=255) aGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTAtcatcatca < 1:2229433/148‑1 (MQ=255) ttACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCAtt > 1:4526458/1‑148 (MQ=255) cTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACt < 1:614845/148‑1 (MQ=255) tGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACtt < 1:10841657/148‑1 (MQ=255) ttCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTttg > 1:8260696/1‑148 (MQ=255) cGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTttgtt > 1:7478022/1‑148 (MQ=255) cccAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTga < 1:9680152/148‑1 (MQ=255) aGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTgagga < 1:4588215/148‑1 (MQ=255) gAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTgaggag > 1:11407790/1‑148 (MQ=255) gAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTgaggag > 1:5334693/1‑148 (MQ=255) tttAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTAt > 1:4873379/1‑148 (MQ=255) tttAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGAGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATGATTACTTTGTTGAGGAGTAt < 1:1742599/148‑1 (MQ=255) aaaGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCa > 1:6394600/1‑148 (MQ=255) aaGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCAACATTACTTTGTTGAGGAGTATTCTaa < 1:647728/148‑1 (MQ=255) gCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATa < 1:2107803/148‑1 (MQ=255) cGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAg > 1:9006311/1‑148 (MQ=255) ggACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAgg > 1:10922200/1‑148 (MQ=255) gACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGt < 1:386890/148‑1 (MQ=255) aCTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTa < 1:1844798/148‑1 (MQ=255) cTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTAt > 1:11548475/1‑148 (MQ=255) aTTAGCTGCGGTCGATGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCa > 1:9815104/1‑148 (MQ=255) aGCTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAAt < 1:3197063/148‑1 (MQ=255) cTGCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAAttt < 1:7039309/148‑1 (MQ=255) gCGGTCGGTGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTtat > 1:7924555/1‑148 (MQ=255) ggtcggtGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATaa < 1:6052153/148‑1 (MQ=255) ggccggtGTCGTTGTTGTCTCAATGAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATaa < 1:3917631/145‑1 (MQ=255) cggtGTCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCa > 1:6333547/1‑148 (MQ=255) gtgtCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAAt > 1:2969165/1‑148 (MQ=255) gtCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAg > 1:8777278/1‑148 (MQ=255) tCGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGc < 1:8393034/148‑1 (MQ=255) cGTTGTTGTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCt > 1:7749687/1‑148 (MQ=255) ggtgttgtCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTc < 1:8590682/146‑1 (MQ=255) ttgttgTCTCAATAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTcc > 1:8125630/1‑148 (MQ=255) | TGAATTTTGTAAAATTTTACTCGTATCTAACCATGCAATTTGGCTCCAATCTCCTACAGCAAAACCTGCTTCAGTGGAAAAAGTTACTGTTCGCCCAGAATTTAAAAGCGGACTATTAGCTGCGGTCGGTGTCGTTGTTGTCTCATTAAAAGAACCGAAAGGGTTTCCTAGATGTGCTCCTTTATTTTCAGGGTCTATTTCCCAGCCTAATCTATGATTATCATCATCATTACTTTGTTGAGGAGTATTCCAATAGGTATCAAATTTATAACCAATAGCTCCTTTCAGG > NC_009004/1277539‑1277827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |