BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_009004	1,588,356	T→A	N243Y (AAT→TAT)	LLMG_RS08135 ←	nucleotide sugar dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_009004	1,588,356	0	T	A	100.0%	2151.3 / NA	555	N243Y (AAT→TAT)	LLMG_RS08135	nucleotide sugar dehydrogenase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (282/273); total (282/273)

Only 100 of 596 total aligned reads displayed.

TGCTCAACAATGTGCTGTTTTCTGGTTTCGTTTGTATTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATTATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGATTGCTTC  >  NC_009004/1588211‑1588500

     aacaaTGTGCTGTTTTCTGGTTTCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTc                                                                                                                                           >  1:7500028/1‑148 (MQ=255)

      acaaTGTGCTGTTTTCTGGTTTCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTcc                                                                                                                                          >  1:2598099/1‑148 (MQ=255)

          tgtgCTGTTTTCTGGTTTCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAAt                                                                                                                                      >  1:5177410/1‑148 (MQ=255)

            tgCTGTTTTCTGGTTTCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATcc                                                                                                                                    >  1:8626208/1‑148 (MQ=255)

             gCTGTTTTCTGGTTTCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCg                                                                                                                                   <  1:9103848/148‑1 (MQ=255)

                gTTTTCTGGTTTCGTTTGATTTGACAATAGCCGTCATCAACTGCTGAGGACCGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATACCCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGa                                                                                                                                <  1:11171986/148‑1 (MQ=255)

                 ttttCTGGTTTCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGaa                                                                                                                               >  1:6623027/1‑148 (MQ=255)

                 ttttCTGGTTTCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGaa                                                                                                                               >  1:8944349/1‑148 (MQ=255)

                  tttCTGGTTTCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAAt                                                                                                                              >  1:6293883/1‑148 (MQ=255)

                    tCTGGTTTCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATcc                                                                                                                            >  1:4527969/1‑148 (MQ=255)

                    tCTGGTTTCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATcc                                                                                                                            >  1:9777707/1‑148 (MQ=255)

                          ttCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATccaaccca                                                                                                                      <  1:3574115/148‑1 (MQ=255)

                           tCGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATccaacccaa                                                                                                                     >  1:10975192/1‑148 (MQ=255)

                            cGTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGTGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATccaacccaac                                                                                                                    >  1:5027320/1‑148 (MQ=255)

                             gTTTGATTTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCCTGAATCCAACCCAaca                                                                                                                   >  1:11129660/1‑148 (MQ=255)

                               ttgatttGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACAcc                                                                                                                 >  1:11673369/6‑148 (MQ=255)

                               ttgatttGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACAcc                                                                                                                 >  1:10618108/6‑148 (MQ=255)

                                  atttGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGtt                                                                                                              <  1:10006273/146‑1 (MQ=255)

                                   tttGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACTCAACACCGTta                                                                                                             <  1:870508/147‑1 (MQ=255)

                                    ttGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTtaa                                                                                                            <  1:5243879/148‑1 (MQ=255)

                                       cttaTAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTtaataa                                                                                                         <  1:3471314/145‑1 (MQ=255)

                                        cAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTaataat                                                                                                        <  1:6077588/148‑1 (MQ=255)

                                        cAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTaataat                                                                                                        >  1:2928056/1‑148 (MQ=255)

                                           tAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATg                                                                                                     <  1:3294978/148‑1 (MQ=255)

                                            aGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAataataaag                                                                                                    >  1:9327710/1‑145 (MQ=255)

                                             gCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGtt                                                                                                   >  1:8192/1‑148 (MQ=255)

                                               cGTCAACAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGa                                                                                                 <  1:2763545/148‑1 (MQ=255)

                                                 tcatcaACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACt                                                                                               <  1:7243680/148‑1 (MQ=255)

                                                 tcatcaACCCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACt                                                                                               <  1:10439463/148‑1 (MQ=255)

                                                        cTCCTGAGGAACGCCCTCTTAATTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACTCCGTTAATAATATGTTGACTATTTAAt                                                                                        <  1:2247705/148‑1 (MQ=255)

                                                        cTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAAt                                                                                        >  1:4754401/1‑148 (MQ=255)

                                                         tCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAAtt                                                                                       <  1:2462328/148‑1 (MQ=255)

                                                          ccTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTg                                                                                      <  1:10560536/148‑1 (MQ=255)

                                                            tGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGAt                                                                                    >  1:7338116/1‑148 (MQ=255)

                                                            tGAGGAACGCCCTCATAACTGGCCAAAAGCTGCGTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGAt                                                                                    >  1:5403932/1‑148 (MQ=255)

                                                             gAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGAtt                                                                                   <  1:1755194/148‑1 (MQ=255)

                                                             gAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGAtt                                                                                   <  1:8437721/148‑1 (MQ=255)

                                                             gAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGAtt                                                                                   >  1:9248341/1‑148 (MQ=255)

                                                                  aCGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGAttttttt                                                                              >  1:4957726/1‑148 (MQ=255)

                                                                  aCGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGAttttttt                                                                              <  1:5832838/148‑1 (MQ=255)

                                                                  aCGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGAttttttt                                                                              >  1:5749447/1‑148 (MQ=255)

                                                                  aCGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGAttttttt                                                                              <  1:2158580/148‑1 (MQ=255)

                                                                   cGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTc                                                                             >  1:2492924/1‑148 (MQ=255)

                                                                       cTCGTAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCa                                                                         <  1:2385611/148‑1 (MQ=255)

                                                                        tCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGGATCCAACCCAACACCGTTAATAATATGTTGTCTATTTAATTGATTTTTTTCGGCAt                                                                        >  1:6741931/1‑148 (MQ=255)

                                                                         cATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATa                                                                       <  1:6475252/148‑1 (MQ=255)

                                                                          aTAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAACCAATAACCACCATAACCAAAACTTGGGTTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATaa                                                                      <  1:4309628/148‑1 (MQ=255)

                                                                          aTAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATaa                                                                      <  1:6996266/148‑1 (MQ=255)

                                                                             aCTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTa                                                                   <  1:8149600/148‑1 (MQ=255)

                                                                              cTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGACATAAGTAt                                                                  >  1:10316086/1‑148 (MQ=255)

                                                                               tGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATc                                                                 <  1:1696386/148‑1 (MQ=255)

                                                                                ggCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAATCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCa                                                                <  1:1299024/148‑1 (MQ=255)

                                                                                  ccAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAg                                                              <  1:4076984/148‑1 (MQ=255)

                                                                                    aaaaGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGtt                                                            >  1:11601013/1‑148 (MQ=255)

                                                                                      aggcagctTTGAGTCTTCCGGCAAACAATGCTCACCATAACATATACTTGGATTATTATACTGTGTCCCAATGCGTGAATCCAACCCGACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCa                                                          <  1:1574022/143‑1 (MQ=255)

                                                                                      aaGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCa                                                          <  1:5309917/148‑1 (MQ=255)

                                                                                       aGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCAt                                                         <  1:10725434/148‑1 (MQ=255)

                                                                                         ctgctTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTa                                                       >  1:9687898/1‑148 (MQ=255)

                                                                                          tgctTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTaa                                                      <  1:11441384/148‑1 (MQ=255)

                                                                                             tttGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTaaaga                                                   >  1:9529929/1‑148 (MQ=255)

                                                                                              ttGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTaaagaa                                                  >  1:10062340/1‑148 (MQ=255)

                                                                                               tGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTaaagaaa                                                 >  1:11220723/1‑148 (MQ=255)

                                                                                                gAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTaaagaaag                                                >  1:9889654/1‑148 (MQ=255)

                                                                                                  gTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGcc                                              >  1:7923284/1‑148 (MQ=255)

                                                                                                  gTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGcc                                              <  1:4693139/148‑1 (MQ=255)

                                                                                                   tCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCa                                             <  1:8837739/148‑1 (MQ=255)

                                                                                                    cTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCAc                                            >  1:6857927/1‑148 (MQ=255)

                                                                                                     tttCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCAcg                                           <  1:716542/148‑1 (MQ=255)

                                                                                                           cAAACAATAACCACCATGACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCTACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATc                                     <  1:1867587/148‑1 (MQ=255)

                                                                                                            aaaCAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCg                                    >  1:2054121/1‑148 (MQ=255)

                                                                                                            aaaCAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCg                                    >  1:8752912/1‑148 (MQ=255)

                                                                                                            aaaCAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGAATTTTTTCGGCATAAGTATCAAGTTCAATAAAGAAAGCCACGCGCATCg                                    >  1:5493376/1‑148 (MQ=255)

                                                                                                              aCAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCa                                  >  1:7741599/1‑148 (MQ=255)

                                                                                                               cAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCaa                                 >  1:8575088/1‑148 (MQ=255)

                                                                                                               cAATAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCaa                                 <  1:3364515/148‑1 (MQ=255)

                                                                                                                aaTAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGGCACGCGCATCGCAag                                <  1:4233295/148‑1 (MQ=255)

                                                                                                                  tAACCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAaggt                              >  1:3166670/1‑148 (MQ=255)

                                                                                                                   aaCCACCATAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAaggta                             >  1:1986640/1‑148 (MQ=255)

                                                                                                                     ccaccaTAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAaggtagg                           >  1:4836450/1‑148 (MQ=255)

                                                                                                                      caccaTAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAaggtaggt                          >  1:11349732/1‑148 (MQ=255)

                                                                                                                       accaTAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAggtaggta                         >  1:2986828/1‑148 (MQ=255)

                                                                                                                        ccaTAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTAt                        >  1:2699589/1‑148 (MQ=255)

                                                                                                                         caTAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTAtt                       <  1:1369168/148‑1 (MQ=255)

                                                                                                                         caTAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTAtt                       >  1:4370488/1‑148 (MQ=255)

                                                                                                                          aTAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTa                      >  1:9392752/1‑148 (MQ=255)

                                                                                                                           tAACCAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAg                     <  1:5584299/148‑1 (MQ=255)

                                                                                                                              ccAAAACTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCaa                  >  1:4597725/1‑148 (MQ=255)

                                                                                                                                 aaaCTTGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCaaaaa               >  1:3681306/1‑148 (MQ=255)

                                                                                                                                      tGGATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTg          <  1:6206055/148‑1 (MQ=255)

                                                                                                                                       ggATTATTATAATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGa         <  1:7533252/148‑1 (MQ=255)

                                                                                                                                        gATTATTATAATGTGTCCCAAGCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAACAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGAt        <  1:2842894/148‑1 (MQ=255)

                                                                                                                                         attattataATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGAtt       >  1:5937645/1‑148 (MQ=255)

                                                                                                                                          ttattataaTGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGATTg      >  1:10858067/1‑148 (MQ=255)

                                                                                                                                          ttattataaTGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGATTg      <  1:10168440/148‑1 (MQ=255)

                                                                                                                                           tattataatGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGATTGc     <  1:8308202/148‑1 (MQ=255)

                                                                                                                                           tattataatGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGATTGc     <  1:7974236/148‑1 (MQ=255)

                                                                                                                                           tattataatGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGATTGc     <  1:3873059/148‑1 (MQ=255)

                                                                                                                                            attataatGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGATTGCt    >  1:3774864/1‑148 (MQ=255)

                                                                                                                                             ttataatGTGTCCCAATCCGTGAATCCAACCCAACTCCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGTCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGATTGCtt   <  1:5683889/148‑1 (MQ=255)

                                                                                                                                              tataatGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGATTGCTTc  >  1:148827/1‑148 (MQ=255)

TGCTCAACAATGTGCTGTTTTCTGGTTTCGTTTGTATTGACAATAGCCGTCATCAACTCCTGAGGAACGCCCTCATAACTGGCCAAAAGCTGCTTTGAGTCTTTCGGCAAACAATAACCACCATAACCAAAACTTGGATTATTATTATGTGTCCCAATCCGTGAATCCAACCCAACACCGTTAATAATATGTTGACTATTTAATTGATTTTTTTCGGCATAAGTATCAAGTTCATTAAAGAAAGCCACGCGCATCGCAAGGTAGGTATTAGCAAAAAGTTTGATTGCTTC  >  NC_009004/1588211‑1588500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`