BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_009004	26,455	T→C	intergenic (+111/‑39)	LLMG_RS00135 → / → LLMG_RS00140	tRNA‑Asn/PTS transporter subunit EIIC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_009004	26,455	0	T	C	100.0%	3293.0 / NA	811	intergenic (+111/‑39)	LLMG_RS00135/LLMG_RS00140	tRNA‑Asn/PTS transporter subunit EIIC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (395/416); total (395/416)

Only 100 of 847 total aligned reads displayed.

TCATGATGTCGTCAGTTCGAGTCTGACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTATAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAATTGCCTGGGGGGTGTTGA  >  NC_009004/26310‑26599

     atgTCGTCAGTTCGAGTCTGACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTtacaatataa                                                                                                                                           <  1:6421491/148‑1 (MQ=255)

         cgtcAGTTCGAGTCTGACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATtat                                                                                                                                       <  1:5198929/148‑1 (MQ=255)

            cAGTTCGAGTCTGACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATAtt                                                                                                                                    <  1:4641849/148‑1 (MQ=255)

             aGTTCGAGTCTGACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTa                                                                                                                                   >  1:10686495/1‑148 (MQ=255)

               ttCGAGTCTGACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGt                                                                                                                                 <  1:10214720/148‑1 (MQ=255)

                 cGAGTCTGACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTa                                                                                                                               >  1:7311891/1‑148 (MQ=255)

                   aGTCTGACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGCCACCTCCTTTTGTGTCAGGATTTTTATTTCCAGTCTTATTGGTAGCGGATACAATATAATTATATTAGTTACt                                                                                                                             <  1:3410449/148‑1 (MQ=255)

                    gTCTGACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTa                                                                                                                            <  1:4515557/148‑1 (MQ=255)

                    gTCTGACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAACGGTTACAATATAATTATATTAGTTACTa                                                                                                                            <  1:933791/148‑1 (MQ=255)

                        gACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTa                                                                                                                        >  1:8399993/1‑148 (MQ=255)

                         aCATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTaa                                                                                                                       >  1:8074335/1‑148 (MQ=255)

                           aTCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAg                                                                                                                     >  1:4764648/1‑148 (MQ=255)

                           aTCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAg                                                                                                                     <  1:5470721/148‑1 (MQ=255)

                           aTCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAg                                                                                                                     >  1:7806697/1‑148 (MQ=255)

                             ccGCAGTTACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGa                                                                                                                   <  1:8328987/148‑1 (MQ=255)

                               gCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGt                                                                                                                 <  1:8015231/148‑1 (MQ=255)

                                 aGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGGCAGGATTTTTATTTACAGTCTTATTGGTAGCGGGTACAATATAATTATATTAGTTACTATGTAAAGGAGTCt                                                                                                               >  1:676890/1‑148 (MQ=255)

                                      cTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAAt                                                                                                          <  1:5317839/148‑1 (MQ=255)

                                       tAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATg                                                                                                         <  1:5654904/148‑1 (MQ=255)

                                       tAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATg                                                                                                         >  1:5831322/1‑148 (MQ=255)

                                         aGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGAc                                                                                                       >  1:9480043/1‑148 (MQ=255)

                                         aGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGAc                                                                                                       >  1:11205822/1‑148 (MQ=255)

                                         aGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGAc                                                                                                       <  1:10830684/148‑1 (MQ=255)

                                           tCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTg                                                                                                     >  1:6197422/1‑148 (MQ=255)

                                           tCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTg                                                                                                     <  1:9883794/148‑1 (MQ=255)

                                            cACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGa                                                                                                    <  1:3779240/148‑1 (MQ=255)

                                              ccTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATa                                                                                                  >  1:1231362/1‑148 (MQ=255)

                                                  aGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGt                                                                                              <  1:8147053/148‑1 (MQ=255)

                                                  aGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGt                                                                                              <  1:234932/148‑1 (MQ=255)

                                                  aGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTCGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGt                                                                                              <  1:4122685/148‑1 (MQ=255)

                                                    ggTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTaa                                                                                            <  1:3216741/148‑1 (MQ=255)

                                                    ggTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTaa                                                                                            <  1:9697789/148‑1 (MQ=255)

                                                      tGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGc                                                                                          >  1:3652706/1‑148 (MQ=255)

                                                      tGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGc                                                                                          <  1:10748685/148‑1 (MQ=255)

                                                         cTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTa                                                                                       >  1:8720355/1‑148 (MQ=255)

                                                         cTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTa                                                                                       >  1:8222759/1‑148 (MQ=255)

                                                          tttttttATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTaa                                                                                      <  1:6689145/148‑1 (MQ=255)

                                                          ttttcttATTTTATAAATTTCATTAATACATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTaa                                                                                      >  1:1512215/1‑148 (MQ=255)

                                                           ttttttATTTTATAAATATCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTaaa                                                                                     >  1:1597730/1‑148 (MQ=255)

                                                             ttttattttaTAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAg                                                                                   <  1:2624510/148‑1 (MQ=255)

                                                              tttattttatAAATTTCAGTAATAAGTCTTGGCACCTCCTTTTGTGTCATGATTTTTATTTACAGTCTTATTTGTAGCGGTCACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATCACTGATACTGTAAGCTTAAAAGt                                                                                  >  1:653729/1‑148 (MQ=255)

                                                                  ttttatAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGa                                                                              <  1:8559582/148‑1 (MQ=255)

                                                                  ttttatAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACACTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGa                                                                              <  1:1411498/148‑1 (MQ=255)

                                                                   tttatAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAg                                                                             >  1:6901622/1‑148 (MQ=255)

                                                                   tttatAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAg                                                                             >  1:10475196/1‑148 (MQ=255)

                                                                   tttatAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAg                                                                             >  1:7140823/1‑148 (MQ=255)

                                                                    ttatAAATTTGATTAATAAATCTTGGGACCTCCTTTTGTGACAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGt                                                                            <  1:4238203/148‑1 (MQ=255)

                                                                     tataAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGtt                                                                           >  1:1000544/1‑148 (MQ=255)

                                                                       taAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTAATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGTGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCa                                                                         >  1:9426604/1‑148 (MQ=255)

                                                                          aTTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCaaaa                                                                      >  1:6012657/1‑148 (MQ=255)

                                                                            ttCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAAc                                                                    >  1:10947097/1‑148 (MQ=255)

                                                                                ttAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTCGTTAATATGTAAAGGAGTCTGATATGACTGATACTCTAAGCTTAAAAGTACGAGTTCAAAAACTTgg                                                                >  1:11135291/1‑148 (MQ=255)

                                                                                ttAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTgg                                                                >  1:3513271/1‑148 (MQ=255)

                                                                                ttAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGAAAGAGTTCAAAAACTTgg                                                                >  1:9253917/1‑148 (MQ=255)

                                                                                 taataaATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGt                                                               <  1:8826673/148‑1 (MQ=255)

                                                                                 taataaATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGt                                                               <  1:2108275/148‑1 (MQ=255)

                                                                                  aataaATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTa                                                              <  1:10516945/148‑1 (MQ=255)

                                                                                  aataaATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTa                                                              >  1:7932791/1‑148 (MQ=255)

                                                                                  aataaATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTa                                                              <  1:6244816/148‑1 (MQ=255)

                                                                                     aaaTCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTg                                                           >  1:5494577/1‑148 (MQ=255)

                                                                                      aaTCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGc                                                          <  1:11323850/148‑1 (MQ=255)

                                                                                        tCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCAt                                                        <  1:10054806/148‑1 (MQ=255)

                                                                                        tCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCAt                                                        >  1:2756408/1‑148 (MQ=255)

                                                                                         cTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCAtt                                                       >  1:1692098/1‑148 (MQ=255)

                                                                                          ttGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTa                                                      >  1:2449227/1‑148 (MQ=255)

                                                                                          ttGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTa                                                      <  1:7633042/148‑1 (MQ=255)

                                                                                           tGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTAt                                                     <  1:7507650/148‑1 (MQ=255)

                                                                                            tgCACCTCCTTTTGTGTCAGGATTTTTATTTCCAGTCTTATTGGTGGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAGAGTACGAGTTCAAAAACTTGGTACTGCATTATc                                                    <  1:3834085/147‑1 (MQ=255)

                                                                                            ggCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATc                                                    >  1:1175563/1‑148 (MQ=255)

                                                                                              cACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTa                                                  >  1:5702338/1‑148 (MQ=255)

                                                                                              cACCTCCTTTTGTCTGAGGATTTTTATTTACAGTCTTATTGATATCGGTTACAATATAATTATATTAGTTACTATCTAAAGGAGTCTGAAATGACTGCTACTGTAAGCTTAAAAGAACGAGTTCAAAAACTTGATACTGCATTATCTa                                                  >  1:2009538/1‑148 (MQ=255)

                                                                                                 ctcctTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAata                                               >  1:4900252/1‑148 (MQ=255)

                                                                                                 ctcctTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAata                                               >  1:3574823/1‑148 (MQ=255)

                                                                                                  tcctTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAatat                                              <  1:2540527/148‑1 (MQ=255)

                                                                                                   cctTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATg                                             >  1:5036434/1‑148 (MQ=255)

                                                                                                   cctTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATg                                             >  1:9583494/1‑148 (MQ=255)

                                                                                                   cctTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATg                                             <  1:1299445/148‑1 (MQ=255)

                                                                                                   cctTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATg                                             >  1:7403375/1‑148 (MQ=255)

                                                                                                       ttGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTaa                                         <  1:11493655/148‑1 (MQ=255)

                                                                                                         gtgtCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATg                                       <  1:7021358/148‑1 (MQ=255)

                                                                                                         gtgtCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATg                                       <  1:11567339/148‑1 (MQ=255)

                                                                                                          tgtCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGc                                      <  1:4362346/148‑1 (MQ=255)

                                                                                                            tCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGccc                                    >  1:2918059/1‑148 (MQ=255)

                                                                                                               ggATTTTTATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAat                                 >  1:11393642/1‑148 (MQ=255)

                                                                                                                  tttttATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATAtt                              >  1:11009467/1‑148 (MQ=255)

                                                                                                                   ttttATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTc                             <  1:10284358/148‑1 (MQ=255)

                                                                                                                   ttttATTTACAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTc                             >  1:2995028/1‑148 (MQ=255)

                                                                                                                    tttatttaCAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTcc                            <  1:19684/148‑1 (MQ=255)

                                                                                                                      tatttaCAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTg                          >  1:1828637/1‑148 (MQ=255)

                                                                                                                         ttaCAGTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGttt                       >  1:442659/1‑148 (MQ=255)

                                                                                                                              gTCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAAtt                  <  1:3910539/148‑1 (MQ=255)

                                                                                                                               tCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAATTg                 <  1:3966394/148‑1 (MQ=255)

                                                                                                                               tCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAATTg                 <  1:3066974/148‑1 (MQ=255)

                                                                                                                               tCTTATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAATTg                 >  1:10375096/1‑148 (MQ=255)

                                                                                                                                  tATTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAATTGCCt              >  1:6318951/1‑148 (MQ=255)

                                                                                                                                   aTTGGTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAATTGCCTg             <  1:2232959/148‑1 (MQ=255)

                                                                                                                                      ggTAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAATTGCCTgggg          <  1:8915832/148‑1 (MQ=255)

                                                                                                                                        tAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAATTGCCTgggggg        <  1:905006/148‑1 (MQ=255)

                                                                                                                                        tAGCGGTTACAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAATTGCCTgggggg        >  1:9784204/1‑148 (MQ=255)

                                                                                                                                             gTTACAATATAATTATATTAGTTACTATGTAAAGGAGACTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAATTGCCTGGGGGGTGTTg   <  1:9138271/148‑1 (MQ=255)

TCATGATGTCGTCAGTTCGAGTCTGACATCCGCAGTAACTAAGTCACCTAAGGGTGACTTTTTTTATTTTATAAATTTCATTAATAAATCTTGGCACCTCCTTTTGTGTCAGGATTTTTATTTACAGTCTTATTGGTAGCGGTTATAATATAATTATATTAGTTACTATGTAAAGGAGTCTGAAATGACTGATACTGTAAGCTTAAAAGTACGAGTTCAAAAACTTGGTACTGCATTATCTAATATGGTAATGCCCAATATTCCTGTTTTAATTGCCTGGGGGGTGTTGA  >  NC_009004/26310‑26599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`