| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_009004 | 1,007,288 | C→T | F230F (TTC→TTT) | LLMG_RS05310 → | beta‑glucoside‑specific PTS transporter subunit IIABC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_009004 | 1,007,288 | 0 | C | T | 99.7% | 2334.6 / NA | 599 | F230F (TTC→TTT) | LLMG_RS05310 | beta‑glucoside‑specific PTS transporter subunit IIABC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (291/306); minor base A (2/0); total (293/306) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 599 total aligned reads displayed.
CACTTGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTCGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATGCGTTA > NC_009004/1007143‑1007432 | caCTTGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGc > 1:5044470/1‑148 (MQ=255) aCTTGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCa > 1:6998300/1‑148 (MQ=255) cTTGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAg < 1:6600146/148‑1 (MQ=255) ttGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTGTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGc > 1:3713572/1‑148 (MQ=255) ttGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGc > 1:9628995/1‑148 (MQ=255) tGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTCTTGCCATTACAGCATTTGCAGcc > 1:6901222/1‑148 (MQ=255) tGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGcc > 1:9281444/1‑148 (MQ=255) gTTTATCCAGGTTTCGTAGTTGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGAGTAAGCCTCATTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCTACTGGAATGCCAATTATTACCATTACAGCTTTAGCAGGCt > 1:4485563/1‑148 (MQ=255) gTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCt < 1:5408528/148‑1 (MQ=255) tATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCtttt > 1:5189326/1‑148 (MQ=255) aTCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCttttt > 1:8426528/1‑148 (MQ=255) tCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTa > 1:181914/1‑148 (MQ=255) ccAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCAATACCGCATTTGCAGCCTTTTTAg > 1:1000780/1‑148 (MQ=255) ccAGGTTTCGTAGATGGAACTGTCACAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAACATTTGCAGCCTTTTTAg > 1:5801304/1‑148 (MQ=255) ccAGGTTACGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAg < 1:3369671/148‑1 (MQ=255) aGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATTCCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGaa < 1:7379480/148‑1 (MQ=255) gTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAaca > 1:6033606/1‑148 (MQ=255) tttCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAacac < 1:11307302/148‑1 (MQ=255) tttCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAacac < 1:10434511/148‑1 (MQ=255) tCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCa < 1:5985028/148‑1 (MQ=255) tCGTAGATGGAACAGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCa < 1:4713055/148‑1 (MQ=255) cGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAg < 1:9568989/148‑1 (MQ=255) cGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAg < 1:9924248/148‑1 (MQ=255) gTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGTTGGGGTAAGCCACTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGt < 1:10050723/148‑1 (MQ=255) tAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCTTCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGtt > 1:888379/1‑148 (MQ=255) tAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTCCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGtt < 1:5686299/148‑1 (MQ=255) gATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTaa < 1:9520521/148‑1 (MQ=255) aTGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTaaa < 1:11522544/148‑1 (MQ=255) aTGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTaaa < 1:11637702/148‑1 (MQ=255) aTGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTaaa > 1:7135920/1‑148 (MQ=255) ggAACTGTCGCAAACACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGa < 1:8133329/148‑1 (MQ=255) cTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAat > 1:2559973/1‑148 (MQ=255) cTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAat < 1:1668396/148‑1 (MQ=255) gTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGGAAatta > 1:8050383/1‑148 (MQ=255) gCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTc < 1:10238835/148‑1 (MQ=255) cAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTATTGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTcc > 1:6239424/1‑148 (MQ=255) aaaaCATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTg < 1:7600971/148‑1 (MQ=255) cATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGt < 1:9791657/148‑1 (MQ=255) ttGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTCTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGt > 1:8984156/1‑148 (MQ=255) gCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGTACACCAGTTAAAGAAAATTATTCCTGATGTAGTCa > 1:8916059/1‑148 (MQ=255) gAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAAc > 1:9092519/1‑148 (MQ=255) aaaGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACt < 1:4076593/148‑1 (MQ=255) aGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACttt > 1:592464/1‑148 (MQ=255) aGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTCTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACttt > 1:4799445/1‑148 (MQ=255) tggtggGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTc < 1:11103887/148‑1 (MQ=255) ggtggGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCt < 1:10308948/148‑1 (MQ=255) ggtggGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCt < 1:9554946/148‑1 (MQ=255) ggtggGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCt < 1:8284360/148‑1 (MQ=255) gTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTCCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGacac > 1:5128378/1‑148 (MQ=255) tAAGCCTCTTTGGCATACCGTTCTCTGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACAcc > 1:3904292/1‑148 (MQ=255) aGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCAt < 1:4204156/148‑1 (MQ=255) ctctTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCCTCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTGTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTACTTGACACCATTCt > 1:8187783/1‑148 (MQ=255) ctctTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCt > 1:3034811/1‑148 (MQ=255) tctTTGGCATACCGTTCACAGTACCAACAGCTGGTTATGGTCCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCtt < 1:10860899/148‑1 (MQ=255) tGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACg < 1:7682354/148‑1 (MQ=255) ccGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTa < 1:3548511/148‑1 (MQ=255) cGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTAt < 1:9385395/148‑1 (MQ=255) gTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTAtc < 1:11434375/148‑1 (MQ=255) gTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTAtc < 1:7255551/148‑1 (MQ=255) gTTCCCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTAtc < 1:7833553/148‑1 (MQ=255) ttCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTAtct > 1:4294471/1‑148 (MQ=255) tcAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCaa < 1:795966/148‑1 (MQ=255) cAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAAt > 1:4616522/1‑148 (MQ=255) aGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAAtt > 1:10966861/1‑148 (MQ=255) tACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTcc < 1:10683539/148‑1 (MQ=255) aCCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCct < 1:11571329/148‑1 (MQ=255) ccAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCctc < 1:3219856/148‑1 (MQ=255) cAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCctct > 1:7757825/1‑148 (MQ=255) cAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCctct > 1:8764036/1‑148 (MQ=255) aaCAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTg > 1:7505989/1‑148 (MQ=255) aCAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTgg > 1:5864222/1‑148 (MQ=255) gCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCt < 1:1461900/148‑1 (MQ=255) gTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGGTTCCt < 1:398150/148‑1 (MQ=255) tATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGCCACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAg > 1:6110695/1‑148 (MQ=255) aTGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGt > 1:10161077/1‑148 (MQ=255) tGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGtt < 1:4944808/148‑1 (MQ=255) ggTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTa > 1:8482297/1‑148 (MQ=255) gTTCATCTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTAt < 1:6663997/148‑1 (MQ=255) cTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGaaa > 1:11027689/1‑146 (MQ=255) cTGTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGAcc > 1:6480315/1‑148 (MQ=255) gTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAg > 1:2805256/1‑148 (MQ=255) gTAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTGTTAGAACACCAGTTAAAGAAAATTATGCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGGTTATCTCAATTCCCCTGGGCTTCCTAGTTATTGGACCAg > 1:9847455/1‑148 (MQ=255) tAATGCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGt > 1:1716546/1‑148 (MQ=255) gCCAATTATTGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATg > 1:3138969/1‑148 (MQ=255) attattGTCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAAcc < 1:6811422/148‑1 (MQ=255) attGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAGTTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTg > 1:245683/1‑148 (MQ=255) attGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTg > 1:5328927/1‑148 (MQ=255) ttGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGc < 1:11387269/148‑1 (MQ=255) ttGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGc < 1:10820803/148‑1 (MQ=255) tGCCATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTgtt > 1:2928553/1‑146 (MQ=255) ccATTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTc > 1:1339827/1‑148 (MQ=255) aTTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAg < 1:2071116/148‑1 (MQ=255) aTTACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAg < 1:2301418/148‑1 (MQ=255) ttACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAATCTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTGATGAAGCTTGCTTCAGa < 1:1916792/148‑1 (MQ=255) tACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGAt < 1:8622546/148‑1 (MQ=255) tACAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGAt > 1:270637/1‑148 (MQ=255) aCAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATg < 1:2623131/148‑1 (MQ=255) cAGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATGc < 1:8727912/148‑1 (MQ=255) aGCATTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATGCg > 1:10526011/1‑148 (MQ=255) aTTTGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATGCGTTa < 1:6369077/148‑1 (MQ=255) | CACTTGTTTATCCAGGTTTCGTAGATGGAACTGTCGCAAAAACATTTGCAGAAAGTGGTGGGGTAAGCCTCTTTGGGATACCGTTCTCAGTACCAACAGCTGGTTATGGTTCATCTGTAATGCCAATTATTGCCATTACAGCATTCGCAGCCTTTTTAGAACACCAGTTAAAGAAAATTATTCCTGATGTAGTCAAACTTTTCTTGACACCATTCTTTACGGCGATTATCTCAATTCCTCTGGGCTTCCTAGTTATTGGACCAGTAATGAACCTTGCTTCAGATGCGTTA > NC_009004/1007143‑1007432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |