Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_009004 1,167,414 T→G intergenic (+64/‑55) LLMG_RS06065 → / → LLMG_RS06070 hypothetical protein/trypsin‑like peptidase domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0090041,167,4140TG99.7% 1555.6 / NA 392intergenic (+64/‑55)LLMG_RS06065/LLMG_RS06070hypothetical protein/trypsin‑like peptidase domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base G (197/194);  minor base C (0/1);  total (197/195)
Fisher's exact test for biased strand distribution p-value = 4.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 396 total aligned reads displayed.

TGTCCTCCTGGAAGCATTTTGACAGTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTTCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATACCCAGTCATTTATT  >  NC_009004/1167270‑1167558
                                                                                                                                                |                                                                                                                                                
   cctcctGGAAGCATTTTGACAGTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTCTCAATTTAATTTGCCTAGt                                                                                                                                            >  1:2071026/1‑148 (MQ=255)
       ctGGAAGCATTTTGACAGTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCAtt                                                                                                                                        <  1:11632814/148‑1 (MQ=255)
        tGGAAGCATTTTGACAGTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTg                                                                                                                                       >  1:4629931/1‑148 (MQ=255)
         ggAAGCATTTTGACAGTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTgg                                                                                                                                      <  1:10312411/148‑1 (MQ=255)
          gAAGCATTTTGACACTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTggg                                                                                                                                     >  1:502840/1‑148 (MQ=255)
           aaGCATTTTGACAGTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGa                                                                                                                                    <  1:6540356/148‑1 (MQ=255)
             gCATTTTGACAGTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATg                                                                                                                                  >  1:490984/1‑148 (MQ=255)
                 tttGACAGTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGcc                                                                                                                              >  1:11574574/1‑148 (MQ=255)
                  ttGACAGTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCa                                                                                                                             >  1:5729707/1‑148 (MQ=255)
                     aCAGTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTa                                                                                                                          <  1:763669/148‑1 (MQ=255)
                      cactttATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCAGAAATAATTTTTAGCGAAGCGGCCTACTTACATACTATTGGCTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTaa                                                                                                                         >  1:2671102/4‑148 (MQ=255)
                        gTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGa                                                                                                                       <  1:5196546/148‑1 (MQ=255)
                        gTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGa                                                                                                                       <  1:2924193/148‑1 (MQ=255)
                          ttATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGAcc                                                                                                                     >  1:1131999/1‑148 (MQ=255)
                            ataGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCgg                                                                                                                   >  1:5496858/1‑148 (MQ=255)
                            ataGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCgg                                                                                                                   <  1:7685256/148‑1 (MQ=255)
                            ataGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCgg                                                                                                                   <  1:6834541/148‑1 (MQ=255)
                                gagaTATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTa                                                                                                               >  1:5964924/1‑148 (MQ=255)
                                  gaTATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAg                                                                                                             <  1:7528367/148‑1 (MQ=255)
                                  gaTATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAg                                                                                                             >  1:1105950/1‑148 (MQ=255)
                                   atatAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGCGATGGGCCAGTAAGACCGGCTTAAGt                                                                                                            >  1:2845914/1‑148 (MQ=255)
                                     ataACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGGCTAGTCATTGGGATGGGCCAGTAAGACCGGGTTAAGGaa                                                                                                          >  1:5944734/1‑148 (MQ=255)
                                     ataACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTaa                                                                                                          >  1:3651730/1‑148 (MQ=255)
                                           cTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGaaa                                                                                                    >  1:2108560/1‑148 (MQ=255)
                                           cTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGaaa                                                                                                    <  1:10633486/148‑1 (MQ=255)
                                            taataaTGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCATTTGAATTTAATATGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGAAAAGGAaag                                                                                                   >  1:2348253/1‑148 (MQ=255)
                                              ataatGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAaagat                                                                                                 >  1:272167/1‑148 (MQ=255)
                                              ataatGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAaagat                                                                                                 <  1:6152382/148‑1 (MQ=255)
                                                aatGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGAGCCAGTAAGACCGGCTTAAGTAAAGGAaagataa                                                                                               >  1:7384865/1‑148 (MQ=255)
                                                    gACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAagataagata                                                                                           <  1:6925726/148‑1 (MQ=255)
                                                      cAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATg                                                                                         >  1:5146693/1‑148 (MQ=255)
                                                        gCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGaa                                                                                       <  1:7192847/148‑1 (MQ=255)
                                                         cACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGaaa                                                                                      >  1:2422843/1‑148 (MQ=255)
                                                           cTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGgaaaa                                                                                    >  1:10911626/1‑148 (MQ=255)
                                                           cTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGaaaaa                                                                                    <  1:6330242/148‑1 (MQ=255)
                                                            tttttCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGaaaaaa                                                                                   >  1:7764041/1‑148 (MQ=255)
                                                             ttttCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAAc                                                                                  <  1:10858654/148‑1 (MQ=255)
                                                               ttCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACtt                                                                                >  1:2255495/1‑148 (MQ=255)
                                                                 cacaAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTaa                                                                              <  1:9465677/148‑1 (MQ=255)
                                                                 cacaAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGATGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGTTGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTaa                                                                              >  1:1348168/1‑148 (MQ=255)
                                                                 cacaAATAATTTTCAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGCCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTaa                                                                              >  1:5392003/1‑148 (MQ=255)
                                                                   caAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGa                                                                            <  1:8061303/148‑1 (MQ=255)
                                                                   caAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGa                                                                            >  1:1956916/1‑148 (MQ=255)
                                                                      ataatTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTg                                                                         >  1:3507167/1‑148 (MQ=255)
                                                                      ataatTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTg                                                                         >  1:166118/1‑148 (MQ=255)
                                                                        aatTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGtt                                                                       >  1:10999507/1‑148 (MQ=255)
                                                                        aatTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGtt                                                                       >  1:1077351/1‑148 (MQ=255)
                                                                           ttttAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTa                                                                    >  1:7000624/1‑148 (MQ=255)
                                                                             ttAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAAc                                                                  >  1:4818213/1‑148 (MQ=255)
                                                                              tAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACa                                                                 >  1:11383322/1‑148 (MQ=255)
                                                                              tAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACa                                                                 >  1:3464526/1‑148 (MQ=255)
                                                                               tgCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACaa                                                                <  1:9868813/147‑1 (MQ=255)
                                                                               aGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACaa                                                                <  1:7345934/148‑1 (MQ=255)
                                                                               aGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACaa                                                                <  1:9266941/148‑1 (MQ=255)
                                                                                 cGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAata                                                              <  1:10540731/148‑1 (MQ=255)
                                                                                   aaGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATAtt                                                            >  1:9522843/1‑148 (MQ=255)
                                                                                    aGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATAttt                                                           >  1:7916836/1‑148 (MQ=255)
                                                                                     gCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATAtttt                                                          <  1:9693313/148‑1 (MQ=255)
                                                                                      cGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATAttttt                                                         <  1:11506256/148‑1 (MQ=255)
                                                                                      cGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATAttttt                                                         <  1:9004720/148‑1 (MQ=255)
                                                                                         ccTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTttatt                                                      >  1:4442687/1‑148 (MQ=255)
                                                                                           tACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTaa                                                    <  1:8247606/148‑1 (MQ=255)
                                                                                           tACTTAGATAGTATTGGTTGGCACAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTATGTAAAGCAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTaa                                                    >  1:3188676/1‑148 (MQ=255)
                                                                                             cTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAAtg                                                  <  1:9401372/148‑1 (MQ=255)
                                                                                              ttAGATAGTATTGGTTGCCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAAtgt                                                 <  1:8728337/148‑1 (MQ=255)
                                                                                               tAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAAtgtt                                                >  1:10438649/1‑148 (MQ=255)
                                                                                                aGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAAtgttt                                               >  1:3088008/1‑148 (MQ=255)
                                                                                                 gATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAAtgtttg                                              <  1:6294001/148‑1 (MQ=255)
                                                                                                  aTAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAAtgtttgt                                             <  1:9582748/148‑1 (MQ=255)
                                                                                                  aTAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAAtgtttgt                                             >  1:4112188/1‑148 (MQ=255)
                                                                                                  aTAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAAtgtttgt                                             <  1:10830702/148‑1 (MQ=255)
                                                                                                      tATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAgt                                         >  1:4270396/1‑148 (MQ=255)
                                                                                                          ggttggCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAgtggtg                                     <  1:8054856/148‑1 (MQ=255)
                                                                                                          ggttggCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAgtggtg                                     <  1:8662285/148‑1 (MQ=255)
                                                                                                           gttggCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGtggtgg                                    <  1:8838879/148‑1 (MQ=255)
                                                                                                           gttggCAGAACGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGtggtgg                                    <  1:6049936/148‑1 (MQ=255)
                                                                                                                   aaCGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTg                            >  1:4690863/1‑148 (MQ=255)
                                                                                                                    aCGAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGt                           >  1:1013471/1‑148 (MQ=255)
                                                                                                                      gAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGttt                         <  1:10059272/148‑1 (MQ=255)
                                                                                                                      gAAGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGttt                         >  1:9109408/1‑148 (MQ=255)
                                                                                                                       aaGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGtttt                        <  1:11681355/148‑1 (MQ=255)
                                                                                                                        aGGAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTg                       >  1:10504168/1‑148 (MQ=255)
                                                                                                                         ggAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTgg                      <  1:8096871/148‑1 (MQ=255)
                                                                                                                         ggAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTgg                      >  1:2505818/1‑148 (MQ=255)
                                                                                                                         ggAATTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTgg                      >  1:1847223/1‑148 (MQ=255)
                                                                                                                          gAATTGCTTTTGCATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGCCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGc                     >  1:8489125/1‑148 (MQ=255)
                                                                                                                            aTTGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGCAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCaa                   >  1:3750024/1‑148 (MQ=255)
                                                                                                                             ttGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCaaa                  <  1:9337518/148‑1 (MQ=255)
                                                                                                                              tGCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAAt                 >  1:1494887/1‑148 (MQ=255)
                                                                                                                               gCTTTTGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATa                >  1:3923794/1‑148 (MQ=255)
                                                                                                                                  tttGAATTTAATTTGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATAccc             <  1:6391280/148‑1 (MQ=255)
                                                                                                                                      aatttaatttGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATACCCAGTc         <  1:7569819/148‑1 (MQ=255)
                                                                                                                                      aatttaatttGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATACCCAGTc         <  1:6614406/148‑1 (MQ=255)
                                                                                                                                      aatttaatttGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATACCCAGTc         >  1:7796008/1‑148 (MQ=255)
                                                                                                                                         ttaatttGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATACCCAGTCAtt      <  1:11185476/148‑1 (MQ=255)
                                                                                                                                          taatttGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATACCCAGTCAttt     <  1:9808567/148‑1 (MQ=255)
                                                                                                                                           aatttGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATACCCAGTCATTTa    <  1:8687290/148‑1 (MQ=255)
                                                                                                                                            atttGCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATACCCAGTCATTTAt   <  1:5874109/148‑1 (MQ=255)
                                                                                                                                             tttgCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGATGAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATACCCAGTCATTTAtt  <  1:7935611/148‑1 (MQ=255)
                                                                                                                                             tttgCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATACCCAGTCATTTAtt  <  1:8963945/148‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                
TGTCCTCCTGGAAGCATTTTGACAGTTTATAGGAGATATAACCCTAATAATGGACAGCACTTTTTCACAAATAATTTTTAGCGAAGCGGCCTACTTAGATAGTATTGGTTGGCAGAACGAAGGAATTGCTTTTGAATTTAATTTTCCTAGTCATTGGGATGGGCCAGTAAGACCGGCTTAAGTAAAGGAAAGATAAGATATGAAAAAACTTAAGATTGTTTTAACAATATTTTTATTAATGTTTGTTAGTGGTGGCTATTCTGTTTTGGCAAATACCCAGTCATTTATT  >  NC_009004/1167270‑1167558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: