Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_009004 1,838,903 T→C T74A (ACT→GCT)  LLMG_RS09315 ← MarR family transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0090041,838,9030TC99.8% 2255.8 / NA 570T74A (ACT→GCT) LLMG_RS09315MarR family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (314/255);  total (314/256)
Fisher's exact test for biased strand distribution p-value = 4.49e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 570 total aligned reads displayed.

GTTTCGGAAATATCATTGTGCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGTCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGTTTTGAAATTCCGTCTGCTC  >  NC_009004/1838758‑1839046
                                                                                                                                                 |                                                                                                                                               
 tttCGAAAATATCATTGTGCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTCAACTTGAGCCGt                                                                                                                                              >  1:4020683/1‑148 (MQ=255)
  ttCGGAAATATCATTGTGCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAAATGTTTAACTTGAGCCggt                                                                                                                                             >  1:7977858/1‑146 (MQ=255)
    cGGAAATATCATTGTGCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTac                                                                                                                                           >  1:6116330/1‑148 (MQ=255)
         atatCATTGTGCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGGGCCGTTACACTCg                                                                                                                                      >  1:11185162/1‑148 (MQ=255)
           atCATTGTGCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGaa                                                                                                                                    >  1:10163394/1‑148 (MQ=255)
            tCATTGTGCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGGAg                                                                                                                                   >  1:7145135/1‑148 (MQ=255)
            tCATTGTGCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAg                                                                                                                                   <  1:3869526/148‑1 (MQ=255)
               ttGTGCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCt                                                                                                                                >  1:9830811/1‑148 (MQ=255)
               ttGTGCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCt                                                                                                                                >  1:1808342/1‑148 (MQ=255)
                 gtgCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTa                                                                                                                              <  1:4708582/148‑1 (MQ=255)
                 gtgCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTa                                                                                                                              <  1:7912623/148‑1 (MQ=255)
                 gtgCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTa                                                                                                                              >  1:10807877/1‑148 (MQ=255)
                   gCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAat                                                                                                                            >  1:2200223/1‑148 (MQ=255)
                     aTTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAatat                                                                                                                          >  1:10382133/1‑148 (MQ=255)
                      ttGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATc                                                                                                                         <  1:549906/148‑1 (MQ=255)
                         tATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAg                                                                                                                      >  1:11672056/1‑148 (MQ=255)
                          aTCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGc                                                                                                                     >  1:9055669/1‑148 (MQ=255)
                                 gtTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAg                                                                                                              >  1:10648304/1‑148 (MQ=255)
                                 gtTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAg                                                                                                              >  1:8250273/1‑148 (MQ=255)
                                  tttCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACACGAAGGCTTAATATCAAGCAGTTCAGc                                                                                                             <  1:2653612/148‑1 (MQ=255)
                                   ttCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCa                                                                                                            >  1:1524281/1‑148 (MQ=255)
                                     cTTGGGCTTCCCGTCTTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAATCATTTGTGGTTCTTCCAATTGTTTAACTTGAGCCGGTACACTCGAAGGCTTAATATCAAATAGTTCAGCAAt                                                                                                          <  1:2397131/148‑1 (MQ=255)
                                     cTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAAt                                                                                                          <  1:2510622/148‑1 (MQ=255)
                                        gggCTTCCGGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTATATCATTTTCATCTTGTTTACGCATAACCATTTCTGCTTCTTGCAATTGTTTAACTTGAGCCGATACACTCGAACGCTCAATATCAAGCAGAACAGCAATTTc                                                                                                       <  1:6838143/148‑1 (MQ=255)
                                         ggCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCa                                                                                                      >  1:7588558/1‑148 (MQ=255)
                                          gCTTGCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAg                                                                                                     <  1:8972454/148‑1 (MQ=255)
                                          gCTTCCCGTCCTTTTTCTGTTAAAAAGATATGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGATACACTCGAAGGCGTAATATCAAGCAGTTCAGCAATTTCAg                                                                                                     <  1:2999052/148‑1 (MQ=255)
                                           cTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGc                                                                                                    <  1:3640367/148‑1 (MQ=255)
                                            ttCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCa                                                                                                   <  1:1960029/148‑1 (MQ=255)
                                              cccGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCAtt                                                                                                 <  1:1424152/148‑1 (MQ=255)
                                                   ccTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTa                                                                                            >  1:11531647/1‑148 (MQ=255)
                                                   ccTATTTCTGTTAAAAACATACGATGGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACTCACGAAGGCTTAATATCAAGCAGTTCAGCAATTACAGCATTTGATa                                                                                            >  1:5279412/1‑148 (MQ=255)
                                                     tttttCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAg                                                                                          >  1:6742715/1‑148 (MQ=255)
                                                      ttttCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGc                                                                                         >  1:4283148/1‑148 (MQ=255)
                                                       tttCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGcc                                                                                        <  1:3137170/148‑1 (MQ=255)
                                                         tCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCAt                                                                                      <  1:496064/148‑1 (MQ=255)
                                                            gTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCtt                                                                                   >  1:3271061/1‑148 (MQ=255)
                                                              tAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCg                                                                                 >  1:8345294/1‑148 (MQ=255)
                                                              tAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCg                                                                                 >  1:10217946/1‑148 (MQ=255)
                                                               aaaaaGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGt                                                                                <  1:5828375/148‑1 (MQ=255)
                                                               aaaaaGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGt                                                                                <  1:706354/148‑1 (MQ=255)
                                                               aaaaaGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGATACACTCGAAGGGTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGt                                                                                >  1:9407275/1‑148 (MQ=255)
                                                                aaaaGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGtt                                                                               >  1:9600555/1‑148 (MQ=255)
                                                                   aGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCa                                                                            >  1:87476/1‑148 (MQ=255)
                                                                    gATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCAt                                                                           <  1:7649719/148‑1 (MQ=255)
                                                                    gATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCAt                                                                           >  1:6527932/1‑148 (MQ=255)
                                                                    gATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATCTGTTAAGCCATCTTCGTTCCAt                                                                           >  1:8185602/1‑148 (MQ=255)
                                                                     aTACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATa                                                                          >  1:6645126/1‑148 (MQ=255)
                                                                      tACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATaa                                                                         <  1:4071218/148‑1 (MQ=255)
                                                                        cGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTAACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAAtt                                                                       >  1:5790821/1‑148 (MQ=255)
                                                                          aTTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCg                                                                     <  1:4181258/148‑1 (MQ=255)
                                                                            tGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGAc                                                                   >  1:2069794/1‑148 (MQ=255)
                                                                                  gTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTaa                                                             <  1:4428009/148‑1 (MQ=255)
                                                                                  gTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTaa                                                             >  1:8607278/1‑148 (MQ=255)
                                                                                   tttATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAAt                                                            >  1:537861/1‑148 (MQ=255)
                                                                                     tATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATcc                                                          <  1:7323690/148‑1 (MQ=255)
                                                                                     tATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATcc                                                          <  1:5201698/148‑1 (MQ=255)
                                                                                      aTCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCt                                                         >  1:9512698/1‑148 (MQ=255)
                                                                                      aTCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCt                                                         >  1:1367031/1‑148 (MQ=255)
                                                                                      aTCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCt                                                         >  1:8524013/1‑148 (MQ=255)
                                                                                        cATTTTCATCTTGTTTACGTATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTg                                                       >  1:2887275/1‑148 (MQ=255)
                                                                                          ttttCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTggg                                                     >  1:2800084/1‑148 (MQ=255)
                                                                                          ttttCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTggg                                                     >  1:10973190/1‑148 (MQ=255)
                                                                                           tttCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGc                                                    >  1:4781918/1‑148 (MQ=255)
                                                                                              cATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAGCTTGAACCGTTACACTCGAAGGCTAAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCACCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCAcc                                                 <  1:2467654/148‑1 (MQ=255)
                                                                                                tCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCAt                                               >  1:8871178/1‑148 (MQ=255)
                                                                                                 cTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCAtt                                              >  1:10582857/1‑148 (MQ=255)
                                                                                                  ttGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTa                                             <  1:4922892/148‑1 (MQ=255)
                                                                                                  ttGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTa                                             >  1:8373222/1‑148 (MQ=255)
                                                                                                      ttACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGAt                                         >  1:3071720/1‑148 (MQ=255)
                                                                                                        aCGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTc                                       >  1:9136938/1‑148 (MQ=255)
                                                                                                           aaTAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCt                                    <  1:6070828/148‑1 (MQ=255)
                                                                                                           aaTAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCt                                    >  1:3353096/1‑148 (MQ=255)
                                                                                                           aaTAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCt                                    <  1:3823123/148‑1 (MQ=255)
                                                                                                           aaTAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGCGCACCATTACGATTCCCt                                    >  1:216561/1‑148 (MQ=255)
                                                                                                            aTAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTc                                   >  1:11326792/1‑148 (MQ=255)
                                                                                                             tAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCg                                  <  1:11108113/148‑1 (MQ=255)
                                                                                                             tAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCg                                  <  1:3762146/148‑1 (MQ=255)
                                                                                                             tAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCg                                  <  1:100204/148‑1 (MQ=255)
                                                                                                              aaCCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGa                                 >  1:6971912/1‑148 (MQ=255)
                                                                                                              aaCCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGa                                 >  1:10534059/1‑148 (MQ=255)
                                                                                                              aaCCATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGa                                 >  1:7812440/1‑148 (MQ=255)
                                                                                                               aCCATTTCTCCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGAt                                <  1:4616997/148‑1 (MQ=255)
                                                                                                               aCCATGTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCACCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGCTTCCCTCgct                                >  1:6019618/1‑146 (MQ=255)
                                                                                                                 cATTTCTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGAttt                              >  1:6431685/1‑148 (MQ=255)
                                                                                                                      cTGCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCAt                         <  1:11379221/148‑1 (MQ=255)
                                                                                                                       agCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCAACTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATc                        <  1:3462570/147‑1 (MQ=255)
                                                                                                                        gCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCt                       >  1:9700696/1‑148 (MQ=255)
                                                                                                                        gCTTCTTCCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCAAAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCt                       <  1:1253138/148‑1 (MQ=255)
                                                                                                                          ttcttcCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGt                     >  1:9285522/1‑148 (MQ=255)
                                                                                                                          ttcttcCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGt                     >  1:11439141/1‑148 (MQ=255)
                                                                                                                          ttcttcCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGt                     <  1:5687692/148‑1 (MQ=255)
                                                                                                                           tcttcCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGtt                    <  1:1627793/148‑1 (MQ=255)
                                                                                                                              tcCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTATGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGTTTTg                 >  1:8460303/1‑148 (MQ=255)
                                                                                                                              tcCAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGTTTTg                 <  1:5045586/148‑1 (MQ=255)
                                                                                                                               ccAATTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGTTTTGa                >  1:6286469/1‑148 (MQ=255)
                                                                                                                                 aaTTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGTTTTGaaa              <  1:9248167/148‑1 (MQ=255)
                                                                                                                                  aTTGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGTTATGAAAt             >  1:5934661/1‑148 (MQ=255)
                                                                                                                                   ttGTTTAACTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGTTTTGAAAtt            <  1:10052676/148‑1 (MQ=255)
                                                                                                                                         aaCTTGAGCCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGTTTTGAAATTCCGTCt      <  1:2315414/148‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                               
GTTTCGGAAATATCATTGTGCATTGTATCTCGTGTTTCTTGGGCTTCCCGTCCTTTTTCTGTTAAAAAGATACGATTGACGCGTTTATCATTTTCATCTTGTTTACGAATAACCATTTCTGCTTCTTCCAATTGTTTAACTTGAGTCGTTACACTCGAAGGCTTAATATCAAGCAGTTCAGCAATTTCAGCATTTGTTAAGCCATCTTCGTTCCATAATTCGACAAGTAATCCTTGGGCACCATTACGATTCCCTCGATTTTTCATCTGTTTTGAAATTCCGTCTGCTC  >  NC_009004/1838758‑1839046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑