| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_009004 | 1,572,258 | G→A | intergenic (+56/+181) | LLMG_RS08045 → / ← deoD | hypothetical protein/purine‑nucleoside phosphorylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_009004 | 1,572,258 | 0 | G | A | 99.0% | 1783.6 / NA | 477 | intergenic (+56/+181) | LLMG_RS08045/deoD | hypothetical protein/purine‑nucleoside phosphorylase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); major base A (232/237); minor base T (1/4); total (233/244) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 483 total aligned reads displayed.
CTTGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑ATAGAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTGAGA > NC_009004/1572114‑1572399 | ttGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCt < 1:4024902/148‑1 (MQ=255) ttGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCt < 1:8134198/148‑1 (MQ=255) ttGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCt < 1:4475716/148‑1 (MQ=255) ggACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGGttt > 1:4424771/1‑148 (MQ=255) gACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCtttt > 1:9031588/1‑148 (MQ=255) cAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGa > 1:10787674/1‑148 (MQ=255) aaaaGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGaa > 1:10127496/1‑148 (MQ=255) aaaGGTTCAACAGAAATTGTTACCGTACAATCCGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATTCCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑ATAACGCTTTTGAAt < 1:7378993/148‑1 (MQ=255) ggTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAg < 1:10697019/148‑1 (MQ=255) ggTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAg < 1:10904545/148‑1 (MQ=255) gTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGc > 1:527853/1‑148 (MQ=255) ttCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCt < 1:10308237/148‑1 (MQ=255) cAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCttt < 1:2037186/148‑1 (MQ=255) aCAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCttttt < 1:1108382/148‑1 (MQ=255) aGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AATAAGCTTTTGAATAAGCTTTTTTa < 1:8918423/148‑1 (MQ=255) tgtTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCa > 1:11383898/1‑148 (MQ=255) gtTACGGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAg < 1:1653534/148‑1 (MQ=255) cGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATa > 1:10004070/1‑148 (MQ=255) cGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATa > 1:5014202/1‑148 (MQ=255) ttCAATACGACAAAGCTTCTGGTCAAATTACAAGTACATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGCAAAGTTTATCTAAAATAAA‑AAAAACCTTTTGAATAAGCTTTTTTATTTTCAGAAATAAc > 1:2697164/1‑148 (MQ=255) cAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACag > 1:11491472/1‑148 (MQ=255) cAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACag < 1:8998877/148‑1 (MQ=255) aaTACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTACCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACaga < 1:8651162/148‑1 (MQ=255) tACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AGAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACacaag < 1:9857486/148‑1 (MQ=255) tACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACagaag > 1:4511846/1‑148 (MQ=255) tACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACagaag < 1:2267782/148‑1 (MQ=255) tACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACagaag < 1:375750/148‑1 (MQ=255) aCGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACagaaga < 1:9801181/148‑1 (MQ=255) aCGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTCTTATTTTCAGAAATAACagaaga > 1:7741703/1‑148 (MQ=255) aCAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATgg < 1:667869/148‑1 (MQ=255) aaaGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGaa > 1:6581694/1‑148 (MQ=255) aaaGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGaa > 1:10049440/1‑148 (MQ=255) ttCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAActc > 1:4704256/1‑148 (MQ=255) aaTTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCtaataa < 1:5954762/148‑1 (MQ=255) ttACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATaaaa > 1:2887361/1‑148 (MQ=255) ttACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATaaaa > 1:11535771/1‑148 (MQ=255) ttACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATaaaa < 1:10560060/148‑1 (MQ=255) tACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAAt < 1:7468115/148‑1 (MQ=255) cAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAg < 1:4636772/148‑1 (MQ=255) aaGTAAATCTAAATTTAATGCATAAGAACCTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTACCTAAAATAAA‑AGAAAGTTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATata < 1:3945511/148‑3 (MQ=255) aaGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGa > 1:3432049/1‑148 (MQ=255) aGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGaa > 1:3244611/1‑148 (MQ=255) gTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATGTCTGAAAAGATGGAAGCAAAGTTTATCTAAAATACA‑AAAAAGCTGTTGAATAAGCTTGATGATTTTCAGAAATAACAGAAGATGGTAAACTCTTCTATTAAAATAGAAc > 1:5640748/1‑148 (MQ=255) gTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAAc < 1:10586198/148‑1 (MQ=255) gTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAAc > 1:5049760/1‑148 (MQ=255) tAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAATATAGAACt > 1:1879996/1‑148 (MQ=255) tAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTGTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACt > 1:9472545/1‑148 (MQ=255) aTCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGa < 1:5159195/148‑1 (MQ=255) aTCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGa > 1:211681/1‑148 (MQ=255) ttAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaa > 1:3636278/1‑148 (MQ=255) tAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATaaaa < 1:5210577/148‑1 (MQ=255) tGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AATAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAAt < 1:1470539/148‑1 (MQ=255) tGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAAt < 1:4229849/148‑1 (MQ=255) tGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAAt > 1:5525313/1‑148 (MQ=255) gCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATa > 1:2164841/1‑148 (MQ=255) gCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATa > 1:8459250/1‑148 (MQ=255) cATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAg < 1:5691461/148‑1 (MQ=255) aTAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGa < 1:8819365/148‑1 (MQ=255) aGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCt > 1:9376786/1‑148 (MQ=255) gAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCtt < 1:10487287/148‑1 (MQ=255) gAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCtt < 1:7636684/148‑1 (MQ=255) aaaCTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTc > 1:236123/1‑148 (MQ=255) aaaCTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTc < 1:4954560/148‑1 (MQ=255) cTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTaa < 1:970385/148‑1 (MQ=255) tttACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTaaa < 1:11015060/148‑1 (MQ=255) tttACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTaaa < 1:3156701/148‑1 (MQ=255) tttACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTaaa > 1:1719111/1‑148 (MQ=255) tttACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTaaa > 1:6234421/1‑148 (MQ=255) aCCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGt > 1:10179308/1‑148 (MQ=255) cTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCCTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCt > 1:9183625/1‑148 (MQ=255) aTCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAtt < 1:2985301/148‑1 (MQ=255) aTCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAtt > 1:2509078/1‑148 (MQ=255) tctcTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttt > 1:7241792/1‑148 (MQ=255) gtctGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAtttt > 1:7157171/2‑148 (MQ=255) ctctGAAAAGATGTAAGGAAAGTTAATCTAAAATAAA‑AAAACGCGGTTGAATAAGCTTCTCTATTTTCAGAAATAACAGAAGATGGAAAACTCTACTACTAAAATAGAACTTGAGTGATAAAACATAGACCTTCTAAAGGTGTAtttt > 1:8077880/1‑148 (MQ=255) ctctGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAtttt < 1:5408771/148‑1 (MQ=255) tctGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttttt < 1:119200/148‑1 (MQ=255) ctGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAtttttt > 1:8745318/1‑148 (MQ=255) aaaaGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttttttttt > 1:6483592/1‑148 (MQ=255) aaaaGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTAttttttttt > 1:7547133/1‑148 (MQ=255) aGATGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTaa > 1:1570361/1‑148 (MQ=255) tGGAAGGAAAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGaa > 1:11212791/1‑148 (MQ=255) gaaggaaAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAAc < 1:5564140/148‑1 (MQ=255) gaaggaaAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTGTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAAc > 1:6113983/1‑148 (MQ=255) aaggaaAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACa > 1:6374346/1‑148 (MQ=255) aaggaaAGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACa > 1:1937896/1‑148 (MQ=255) aaGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAAt < 1:7913993/148‑1 (MQ=255) aaGTTTAATTAAAATATA‑AAATTGCTTTTGAATAATCTTTTTTATTTTCAGAAATATCAGAAGATGGAAAACTCTTCTAATAAAATAGATCTTGAGTGATAAAAAATAGATCTTCTAAAGGTCTTTTTTTTTTTTAAGAAACAGAAAt < 1:3881536/148‑1 (MQ=255) aGTTTATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAAtt < 1:5814778/148‑1 (MQ=255) tttATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTCTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTa > 1:3543313/1‑148 (MQ=255) ttaaTCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTa < 1:6881339/145‑1 (MQ=255) ttATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTAc > 1:8005331/1‑148 (MQ=255) tATCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACt < 1:9330934/148‑1 (MQ=255) aTCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACtt < 1:9580752/148‑1 (MQ=255) tCTAAAATAAACATA‑ATCTTTTGAATCAGCTTTTTTATTTTCAGAAATAACAGAAGAGGGAAAACTCTTCTAATAAAATATAACTTGAGTGATAAAAAATAGGCCTTCTAAAGGTCTGTTTTTTTTTTAAGAAAGATAAATTTACTTa < 1:3343707/148‑1 (MQ=255) tCTAAAATAAA‑AAAAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTa > 1:9662082/1‑148 (MQ=255) aaataaa‑aaaAAGCTTTTGTATAAGCTTTTTTATTTTCAGTAATAACAGAAGAGGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGAtt > 1:4833511/1‑148 (MQ=255) ataaa‑aaaAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTga > 1:5975422/1‑148 (MQ=255) taaa‑aaaAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTgag > 1:4348073/1‑148 (MQ=255) taaa‑aaaAAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTgag > 1:1336518/1‑148 (MQ=255) | CTTGGACAAAAGGTTCAACAGAAAGTGTTACCGTTCAATACGACAAAGCTTCTGGTCAAATTACAAGTAAATCTAAATTTAATGCATAAGAAACTTTACCTCATCTCTGAAAAGATGGAAGGAAAGTTTATCTAAAATAAA‑ATAGAGCTTTTGAATAAGCTTTTTTATTTTCAGAAATAACAGAAGATGGAAAACTCTTCTAATAAAATAGAACTTGAGTGATAAAAAATAGACCTTCTAAAGGTCTATTTTTTTTTTAAGAAACAGAAATTTACTTAGATTGAGA > NC_009004/1572114‑1572399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |